Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ophiocordyceps_20sinensis_20[genbank_20GCA_5F002077885.1_202017-04-
03] 3,687 sequences; 112,137,038 total letters
Query= AAMG01002236.1
Length=287
Score E
Sequences producing significant alignments: (Bits) Value
seq3225 233 3e-59
>seq3225
Length=6454
Score = 233 bits (258), Expect = 3e-59
Identities = 226/281 (80%), Gaps = 12/281 (4%)
Strand=Plus/Plus
Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60
|||||||||||||||| || |||||| ||||||||||||||||||||| |||| ||||||
Sbjct 5949 GTACGAGAGGAACCGCTGA-TTCAGA-TAATTGGTTTTTGCGGCTGTCCGACCGGGCAGT 6006
Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 6007 GCCGCGAAGCTACCATCTGCTGGATAATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 6066
Query 121 GAACGGGGTGATTCTCTCCTGCACATCGTAGTCGGATACGAATAGGCTTCGGCCCCGAAC 180
||||| || ||| | | || |||| | ||| ||| | ||||||||| |||| |
Sbjct 6067 GAACGCGGCGATAC-CGCCCGCACGT-ATAGATGGACAAGAATAGGCTCCGGCTTAGCGT 6124
Query 181 CTTAGCAGGC--CGGCAACG-GGCGTCCCGCGGAAGCGCGGGGCGCTCAGCTGGCGGATT 237
|| ||||||| | || |||| || |||||||| ||| | | | ||| |||
Sbjct 6125 CTCAGCAGGCGATTCCTCCGCGGCGCCC----GAAGCGCGTCGCGGT-AATTCGCGTATT 6179
Query 238 GCAATTTCACCATGCGCAGGGATAAATCCTTTGCAGACGAC 278
| ||||||| || | || ||| ||||||||||||||||||
Sbjct 6180 GTAATTTCAGCACGAGCGGGGTCAAATCCTTTGCAGACGAC 6220
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 819170739968
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |