Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paracoccidioides_20brasiliensis_20[genbank_20GCA_5F001713695.1_20201 6-08-25] 391 sequences; 29,442,093 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq279 172 4e-38 seq326 132 4e-26 >seq279 Length=233879 Score = 172 bits (190), Expect = 4e-38 Identities = 426/644 (66%), Gaps = 2/644 (0%) Strand=Plus/Plus Query 66298 TGGACACATCAGCGACCAATCACCATCCTGTTCTACACGACGCATAAATAGATCAGGTAT 66357 |||||| | ||| | ||| ||||||| || || || || |||||||||||||||| | Sbjct 179845 TGGACAGAACAGAGTCCATTCACCATTCTTCTCAACGCGTTTCATAAATAGATCAGGTGT 179904 Query 66358 CCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAATGCCGTGATTTTTGCGCAA 66417 ||| || || ||| ||||| || || || || || ||||||| ||||| || | Sbjct 179905 CCAAAGTGCAAGGAATAGATCACGAGCACGAACTTCTTCCTTGCCGTGGTTTTTCCGGAG 179964 Query 66418 GTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTAGATGGCGAACGAGCCCAT 66477 || | ||| ||||| || || ||||||||| || ||||||||||| |||| || Sbjct 179965 ATCCAAGAATTCAAAAATATCCATATGCCATGGCTCAAGGTAGATGGCAAACGCTCCTGG 180024 Query 66478 ACGTTTGCCGCCACCTTGGTCGACGTAGCGAGCGACATTGTTGAAGACACGCAACATCGG 66537 || ||| || || ||||||||||| | || || ||||| || || | ||| || Sbjct 180025 GCGCTTGTTACCTCCCTGGTCGACGTATCTGGCAGTGTTATTGAAAACGCGGAGCATAGG 180084 Query 66538 TACGAGCCCGTTAGATTTGCCATTGGTGCCGTCGATGGGGGATCCTCGTGCC-CGTATAT 66596 || | ||||| || |||||| || || | ||| ||| || || || || || Sbjct 180085 AACAATTCCGTTTGAAGAGCCATTCGTTCCAGCAATGTAGGAACC-AGTACCACGGATGC 180143 Query 66597 CGTGAACATTCAGACCAATACCACCGGCCGTCTTCGAGATGGCAGCACAATCGGCCACTG 66656 ||||| || ||||||||||||||||| ||||| || || ||||||| || | Sbjct 180144 GGTGAATGTTAAGACCAATACCACCGGCGGTCTTTGAAATTAGAGCACAAGTTTTCAGGG 180203 Query 66657 TCCGGAATATGCCGTCAATGGAGTCACCCTTGATGGTCAGGAGGTAGCATGAACTAAGTT 66716 | | ||||| || ||| ||| |||| || | |||| |||| || | | Sbjct 180204 TGTCATAAATGCCCTCGATGCTGTCTTCCTTCATATCAATGAGGAAGCACGAGGCCATCT 180263 Query 66717 GGGGTTTGGGTGTGGCGGCCGAGAAGAGGGTGGGTGTAGCGTGCGTAAAGTAATGGCGAG 66776 | || | ||| || | || ||||||||| || | || || || ||||| | | | Sbjct 180264 GAGGCTGGGGAGTACCAGCGTTGAAGAGGGTAGGAGAGGCATGAGTGAAGTACTTTTGCG 180323 Query 66777 ACATGTAATTGTACGTCTCGATGACAGCATCAATGTTTTCGCCATGAATCCCGAGTGCAC 66836 ||||| || || ||||| ||||| || | || || || || ||||| | ||| Sbjct 180324 ACATGAGGTTATATGTCTCAATGACTCTTTCCACGTCATCTCCGTGGATCCCAATAGCAA 180383 Query 66837 ATCGCATCAGGAGGTATTGAGGCCGTTCGACCAGCCGATCCTTGATATGCATTAAGTAGG 66896 ||||| | | || || || || || | | | | ||||| | | ||||| | Sbjct 180384 CACGCATAATCATGTGCTGTGGGCGCTCTGCAACCTTGCCATTGATTCGAAGCAAGTAAG 180443 Query 66897 AGCGTTCCAGGGTCTTGATACCAAAGTACGAGTAATTGAAATCG 66940 | | ||||||||||||| || || || ||| ||||| ||| Sbjct 180444 ACCTCTCCAGGGTCTTGAATCCGAAATATTGGTAGTTGAAGTCG 180487 Score = 95.1 bits (104), Expect = 1e-14 Identities = 314/478 (66%), Gaps = 14/478 (3%) Strand=Plus/Plus Query 65077 ATCGACCGTGAACTGGATCGCATTAGCAGCCGCCTTGGTCCTAAGATAGTACATGCCGGT 65136 ||| || ||||||||||| | | || || ||| | || | ||||| |||||||| || Sbjct 178582 ATCCACAGTGAACTGGATTGGAGCAGACGCGGCCATTGTACGGAGATAATACATGCCAGT 178641 Query 65137 CTTGAGGCCAGCACGCCAAGCATAGAAATGCATCGATGATAATTTTGCATAAT-TCGGCT 65195 ||| | ||| ||| | ||| ||||| | || |||| || | | | |||| Sbjct 178642 CTTCAAGCCGAGTTTCCAGCCGGTGAAGTGCAT-GCTGGTAATCTTACCCATGGTGGGCT 178700 Query 65196 CGGCCACATGCATATTCAACGACTGACTCTGATCGATGTAACGACCACGATCTGCAGCCA 65255 | || || ||||| | || ||| || |||||| | ||| ||||| ||||||| Sbjct 178701 CCTTCAAGTGAATATTGAGAGATTGAGATTGGTCGATGAAGGCACCTCGATCGGCAGCCA 178760 Query 65256 TGT---CAATGATACGACGTCCCGATATCTCCCAGACGGTCTTGTACAG-GCGACGTACC 65311 | | ||||| | || | || || ||||||||||| ||||| || || | | Sbjct 178761 TCTGAACAATGGTTCGCTGA---GAGATTTCCCAGACGGTTTTGTAAAGTGCTTTG-ATA 178816 Query 65312 TCAATTGGAATCTCCTCAATGTCCTGGACTGAACCACGACGTGCAATAATGCGATTACGC 65371 || ||| || | ||||| |||| || || | | ||||||||| ||||| | Sbjct 178817 TCCTGTGGGATATTGGGAATGTTTTGGATGGAGCCTCCATCTGCAATAATTCGATTCTTC 178876 Query 65372 ATCGACTCTGACCACAAACCCAAATCGATAAGATG-TTGAACCAAGTGACGA-TTGATGA 65429 || || ||||| | |||||| || | || | || || ||| ||| |||| | Sbjct 178877 ATGTTGTCGGACCAGAGACCCAAGTCCACCAGGTCCTTCAA--AAGCCACGGGTTGACAA 178934 Query 65430 CTTGGAACTCGCCGGACAGTACACGACGGACATAGATGTTGGACGTGATGGGTTCAAAGG 65489 |||||||||||| | || ||||| || ||||| || || ||| ||||| ||| Sbjct 178935 TTTGGAACTCGCCTGCAAGGACACGGCGCGAGTAGATATTAGAGGTGTAAGGTTCGAAGC 178994 Query 65490 ATTCAGTGTTGCCTAGAATTTGGGCAGTAGATGCAGTTGGCATGGGAGCGACCAACAA 65547 |||| || || ||||| ||| ||| ||||| ||||||||||| || | ||| Sbjct 178995 ATTCGTTGAATCCAAGAATCTGGCTAGTGCTGGCAGTAGGCATGGGAGCAACAAGCAA 179052 >seq326 Length=563541 Score = 132 bits (146), Expect = 4e-26 Identities = 231/333 (69%), Gaps = 5/333 (2%) Strand=Plus/Minus Query 61087 ATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTG 61146 || |||| |||||||| || || || || || || ||||| | || || || ||| | Sbjct 320694 ATCTGGCAAATGTACAAGAAAGCAGAGGCATCGTTTTGGACCGCAGAAGAAGTTGATCTC 320635 Query 61147 TCCAAAGACATGAATGACTGGGAGCGTTTATCGAGCGGTGAACAAC---ATTTCATTAAA 61203 || ||||| | |||||||| | | || || | ||| | | | ||||| | Sbjct 320634 TCGAAAGATCTTCATGACTGGAACAATAGATTGAATGATGACGAGCGATACTTCATCTCA 320575 Query 61204 CATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACGT 61263 || || ||||| ||||| ||||| ||||| || || ||||||||||| | | || ||| Sbjct 320574 CACGTCTTGGCATTCTTCGCCGCGTCGGATGGAATTGTCAATGAGAACCTCGTCGAGCGT 320515 Query 61264 TTC-GCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCAT 61322 ||| ||| || || | || || | ||||| || || |||||||| |||||||| || Sbjct 320514 TTCAGCGGAGAAG-TCCAGGTCCCTGAGGCCCGATGCTTCTACGGTTTCCAGATCATGAT 320456 Query 61323 GGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGCGGGC 61382 ||| || ||||||| || | ||| |||||||||||||||| |||| ||| | Sbjct 320455 GGAAAACATCCACTCCGAAACTTACTCCCTTCTCATCGATACGTATATCAAGGAACCAAA 320396 Query 61383 GGAACGTGAACGATTGTTCAATGCCATCGAGAC 61415 | | ||| | |||||| ||||||| || || Sbjct 320395 GCAGCGTACATATTTGTTCGATGCCATTGACAC 320363 Score = 122 bits (134), Expect = 7e-23 Identities = 290/435 (67%), Gaps = 5/435 (1%) Strand=Plus/Minus Query 61498 GCATTTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTG 61557 || ||||| | ||||| ||| | || ||||||||||| ||||| ||||||| ||| || Sbjct 320225 GCCTTTGCTGCTGTCGAAGGTATCTTCTTCAGTGGATCCTTTGCGTCAATCTTCTGGCTG 320166 Query 61558 AAGAAACGTGGACTTATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAG 61617 ||||| ||||| |||||||| || || ||||| ||||||| | || || || || ||| Sbjct 320165 AAGAAGCGTGGCCTTATGCCAGGCCTTACCTTTTCCAATGAGCTTATCTCTCGTGATGAG 320106 Query 61618 GGCATGCATTGTGATTTTG-CTGTTTTGCTATTCAAACGCTATCTGGTGAATCGTCCGTC 61676 || | || ||| || | ||| || || ||| | | ||| | || || Sbjct 320105 GGTTTACACACTGACTTCGCCTGCCTT-CTCTTCTCTC---ACCTGCGCCACCGCCCCAG 320050 Query 61677 GGAGGAGCGTGTGGGTGAGATTGTTCGTGAGGCGGTAACTATCGAACAGGAATTTCTGAC 61736 ||| ||| | || | || || || | ||||| ||||| || || || Sbjct 320049 CCCAGAGGCTGTTCAGAAAATCATCACAGAAGCTGTCGCCATCGAGCAGGAGTTCCTCAC 319990 Query 61737 TGACGCTTTGCCCGTCTCACTCATCGGCATGAATTGTGGACTAATGTCGCAGTATATTGA 61796 || ||| | || | |||| |||| ||||| || |||| || || || || Sbjct 319989 AGATGCTCTCCCATGCGCACTTCTCGGAATGAACGCCAAGCTCATGTGCCAATACATCGA 319930 Query 61797 ATTTGTTGCCGACCGTCTGTTGGTCGATTTGGGTATGAAGCGGATCTATAATACGAAAAA 61856 |||||||| || || || | || | | |||| | ||| |||| || | | || Sbjct 319929 GTTTGTTGCTGATCGACTCCTCGTTGCTCTGGGCAATAAGAAAGTCTACAACTCTACCAA 319870 Query 61857 CCCATTTGATTTCATGGACATGATTTCGCTGGATGGCAAGACGAATTTTTTCGAGAAACG 61916 |||||| ||||||||||||| || |||||| ||| ||||| || || || ||||| || Sbjct 319869 CCCATTCGATTTCATGGACAACATCTCGCTGACTGGAAAGACTAACTTCTTTGAGAAGCG 319810 Query 61917 TGTAGGCGACTATCA 61931 ||| || ||||| || Sbjct 319809 TGTTGGTGACTACCA 319795 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397566105464240