Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Paracoccidioides_20brasiliensis_20[genbank_20GCA_5F001713695.1_20201
6-08-25] 391 sequences; 29,442,093 total letters
Query= NC_010671.1
Length=124279
Score E
Sequences producing significant alignments: (Bits) Value
seq279 172 4e-38
seq326 132 4e-26
>seq279
Length=233879
Score = 172 bits (190), Expect = 4e-38
Identities = 426/644 (66%), Gaps = 2/644 (0%)
Strand=Plus/Plus
Query 66298 TGGACACATCAGCGACCAATCACCATCCTGTTCTACACGACGCATAAATAGATCAGGTAT 66357
|||||| | ||| | ||| ||||||| || || || || |||||||||||||||| |
Sbjct 179845 TGGACAGAACAGAGTCCATTCACCATTCTTCTCAACGCGTTTCATAAATAGATCAGGTGT 179904
Query 66358 CCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAATGCCGTGATTTTTGCGCAA 66417
||| || || ||| ||||| || || || || || ||||||| ||||| || |
Sbjct 179905 CCAAAGTGCAAGGAATAGATCACGAGCACGAACTTCTTCCTTGCCGTGGTTTTTCCGGAG 179964
Query 66418 GTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTAGATGGCGAACGAGCCCAT 66477
|| | ||| ||||| || || ||||||||| || ||||||||||| |||| ||
Sbjct 179965 ATCCAAGAATTCAAAAATATCCATATGCCATGGCTCAAGGTAGATGGCAAACGCTCCTGG 180024
Query 66478 ACGTTTGCCGCCACCTTGGTCGACGTAGCGAGCGACATTGTTGAAGACACGCAACATCGG 66537
|| ||| || || ||||||||||| | || || ||||| || || | ||| ||
Sbjct 180025 GCGCTTGTTACCTCCCTGGTCGACGTATCTGGCAGTGTTATTGAAAACGCGGAGCATAGG 180084
Query 66538 TACGAGCCCGTTAGATTTGCCATTGGTGCCGTCGATGGGGGATCCTCGTGCC-CGTATAT 66596
|| | ||||| || |||||| || || | ||| ||| || || || || ||
Sbjct 180085 AACAATTCCGTTTGAAGAGCCATTCGTTCCAGCAATGTAGGAACC-AGTACCACGGATGC 180143
Query 66597 CGTGAACATTCAGACCAATACCACCGGCCGTCTTCGAGATGGCAGCACAATCGGCCACTG 66656
||||| || ||||||||||||||||| ||||| || || ||||||| || |
Sbjct 180144 GGTGAATGTTAAGACCAATACCACCGGCGGTCTTTGAAATTAGAGCACAAGTTTTCAGGG 180203
Query 66657 TCCGGAATATGCCGTCAATGGAGTCACCCTTGATGGTCAGGAGGTAGCATGAACTAAGTT 66716
| | ||||| || ||| ||| |||| || | |||| |||| || | |
Sbjct 180204 TGTCATAAATGCCCTCGATGCTGTCTTCCTTCATATCAATGAGGAAGCACGAGGCCATCT 180263
Query 66717 GGGGTTTGGGTGTGGCGGCCGAGAAGAGGGTGGGTGTAGCGTGCGTAAAGTAATGGCGAG 66776
| || | ||| || | || ||||||||| || | || || || ||||| | | |
Sbjct 180264 GAGGCTGGGGAGTACCAGCGTTGAAGAGGGTAGGAGAGGCATGAGTGAAGTACTTTTGCG 180323
Query 66777 ACATGTAATTGTACGTCTCGATGACAGCATCAATGTTTTCGCCATGAATCCCGAGTGCAC 66836
||||| || || ||||| ||||| || | || || || || ||||| | |||
Sbjct 180324 ACATGAGGTTATATGTCTCAATGACTCTTTCCACGTCATCTCCGTGGATCCCAATAGCAA 180383
Query 66837 ATCGCATCAGGAGGTATTGAGGCCGTTCGACCAGCCGATCCTTGATATGCATTAAGTAGG 66896
||||| | | || || || || || | | | | ||||| | | ||||| |
Sbjct 180384 CACGCATAATCATGTGCTGTGGGCGCTCTGCAACCTTGCCATTGATTCGAAGCAAGTAAG 180443
Query 66897 AGCGTTCCAGGGTCTTGATACCAAAGTACGAGTAATTGAAATCG 66940
| | ||||||||||||| || || || ||| ||||| |||
Sbjct 180444 ACCTCTCCAGGGTCTTGAATCCGAAATATTGGTAGTTGAAGTCG 180487
Score = 95.1 bits (104), Expect = 1e-14
Identities = 314/478 (66%), Gaps = 14/478 (3%)
Strand=Plus/Plus
Query 65077 ATCGACCGTGAACTGGATCGCATTAGCAGCCGCCTTGGTCCTAAGATAGTACATGCCGGT 65136
||| || ||||||||||| | | || || ||| | || | ||||| |||||||| ||
Sbjct 178582 ATCCACAGTGAACTGGATTGGAGCAGACGCGGCCATTGTACGGAGATAATACATGCCAGT 178641
Query 65137 CTTGAGGCCAGCACGCCAAGCATAGAAATGCATCGATGATAATTTTGCATAAT-TCGGCT 65195
||| | ||| ||| | ||| ||||| | || |||| || | | | ||||
Sbjct 178642 CTTCAAGCCGAGTTTCCAGCCGGTGAAGTGCAT-GCTGGTAATCTTACCCATGGTGGGCT 178700
Query 65196 CGGCCACATGCATATTCAACGACTGACTCTGATCGATGTAACGACCACGATCTGCAGCCA 65255
| || || ||||| | || ||| || |||||| | ||| ||||| |||||||
Sbjct 178701 CCTTCAAGTGAATATTGAGAGATTGAGATTGGTCGATGAAGGCACCTCGATCGGCAGCCA 178760
Query 65256 TGT---CAATGATACGACGTCCCGATATCTCCCAGACGGTCTTGTACAG-GCGACGTACC 65311
| | ||||| | || | || || ||||||||||| ||||| || || | |
Sbjct 178761 TCTGAACAATGGTTCGCTGA---GAGATTTCCCAGACGGTTTTGTAAAGTGCTTTG-ATA 178816
Query 65312 TCAATTGGAATCTCCTCAATGTCCTGGACTGAACCACGACGTGCAATAATGCGATTACGC 65371
|| ||| || | ||||| |||| || || | | ||||||||| ||||| |
Sbjct 178817 TCCTGTGGGATATTGGGAATGTTTTGGATGGAGCCTCCATCTGCAATAATTCGATTCTTC 178876
Query 65372 ATCGACTCTGACCACAAACCCAAATCGATAAGATG-TTGAACCAAGTGACGA-TTGATGA 65429
|| || ||||| | |||||| || | || | || || ||| ||| |||| |
Sbjct 178877 ATGTTGTCGGACCAGAGACCCAAGTCCACCAGGTCCTTCAA--AAGCCACGGGTTGACAA 178934
Query 65430 CTTGGAACTCGCCGGACAGTACACGACGGACATAGATGTTGGACGTGATGGGTTCAAAGG 65489
|||||||||||| | || ||||| || ||||| || || ||| ||||| |||
Sbjct 178935 TTTGGAACTCGCCTGCAAGGACACGGCGCGAGTAGATATTAGAGGTGTAAGGTTCGAAGC 178994
Query 65490 ATTCAGTGTTGCCTAGAATTTGGGCAGTAGATGCAGTTGGCATGGGAGCGACCAACAA 65547
|||| || || ||||| ||| ||| ||||| ||||||||||| || | |||
Sbjct 178995 ATTCGTTGAATCCAAGAATCTGGCTAGTGCTGGCAGTAGGCATGGGAGCAACAAGCAA 179052
>seq326
Length=563541
Score = 132 bits (146), Expect = 4e-26
Identities = 231/333 (69%), Gaps = 5/333 (2%)
Strand=Plus/Minus
Query 61087 ATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTG 61146
|| |||| |||||||| || || || || || || ||||| | || || || ||| |
Sbjct 320694 ATCTGGCAAATGTACAAGAAAGCAGAGGCATCGTTTTGGACCGCAGAAGAAGTTGATCTC 320635
Query 61147 TCCAAAGACATGAATGACTGGGAGCGTTTATCGAGCGGTGAACAAC---ATTTCATTAAA 61203
|| ||||| | |||||||| | | || || | ||| | | | ||||| |
Sbjct 320634 TCGAAAGATCTTCATGACTGGAACAATAGATTGAATGATGACGAGCGATACTTCATCTCA 320575
Query 61204 CATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACGT 61263
|| || ||||| ||||| ||||| ||||| || || ||||||||||| | | || |||
Sbjct 320574 CACGTCTTGGCATTCTTCGCCGCGTCGGATGGAATTGTCAATGAGAACCTCGTCGAGCGT 320515
Query 61264 TTC-GCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCAT 61322
||| ||| || || | || || | ||||| || || |||||||| |||||||| ||
Sbjct 320514 TTCAGCGGAGAAG-TCCAGGTCCCTGAGGCCCGATGCTTCTACGGTTTCCAGATCATGAT 320456
Query 61323 GGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGCGGGC 61382
||| || ||||||| || | ||| |||||||||||||||| |||| ||| |
Sbjct 320455 GGAAAACATCCACTCCGAAACTTACTCCCTTCTCATCGATACGTATATCAAGGAACCAAA 320396
Query 61383 GGAACGTGAACGATTGTTCAATGCCATCGAGAC 61415
| | ||| | |||||| ||||||| || ||
Sbjct 320395 GCAGCGTACATATTTGTTCGATGCCATTGACAC 320363
Score = 122 bits (134), Expect = 7e-23
Identities = 290/435 (67%), Gaps = 5/435 (1%)
Strand=Plus/Minus
Query 61498 GCATTTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTG 61557
|| ||||| | ||||| ||| | || ||||||||||| ||||| ||||||| ||| ||
Sbjct 320225 GCCTTTGCTGCTGTCGAAGGTATCTTCTTCAGTGGATCCTTTGCGTCAATCTTCTGGCTG 320166
Query 61558 AAGAAACGTGGACTTATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAG 61617
||||| ||||| |||||||| || || ||||| ||||||| | || || || || |||
Sbjct 320165 AAGAAGCGTGGCCTTATGCCAGGCCTTACCTTTTCCAATGAGCTTATCTCTCGTGATGAG 320106
Query 61618 GGCATGCATTGTGATTTTG-CTGTTTTGCTATTCAAACGCTATCTGGTGAATCGTCCGTC 61676
|| | || ||| || | ||| || || ||| | | ||| | || ||
Sbjct 320105 GGTTTACACACTGACTTCGCCTGCCTT-CTCTTCTCTC---ACCTGCGCCACCGCCCCAG 320050
Query 61677 GGAGGAGCGTGTGGGTGAGATTGTTCGTGAGGCGGTAACTATCGAACAGGAATTTCTGAC 61736
||| ||| | || | || || || | ||||| ||||| || || ||
Sbjct 320049 CCCAGAGGCTGTTCAGAAAATCATCACAGAAGCTGTCGCCATCGAGCAGGAGTTCCTCAC 319990
Query 61737 TGACGCTTTGCCCGTCTCACTCATCGGCATGAATTGTGGACTAATGTCGCAGTATATTGA 61796
|| ||| | || | |||| |||| ||||| || |||| || || || ||
Sbjct 319989 AGATGCTCTCCCATGCGCACTTCTCGGAATGAACGCCAAGCTCATGTGCCAATACATCGA 319930
Query 61797 ATTTGTTGCCGACCGTCTGTTGGTCGATTTGGGTATGAAGCGGATCTATAATACGAAAAA 61856
|||||||| || || || | || | | |||| | ||| |||| || | | ||
Sbjct 319929 GTTTGTTGCTGATCGACTCCTCGTTGCTCTGGGCAATAAGAAAGTCTACAACTCTACCAA 319870
Query 61857 CCCATTTGATTTCATGGACATGATTTCGCTGGATGGCAAGACGAATTTTTTCGAGAAACG 61916
|||||| ||||||||||||| || |||||| ||| ||||| || || || ||||| ||
Sbjct 319869 CCCATTCGATTTCATGGACAACATCTCGCTGACTGGAAAGACTAACTTCTTTGAGAAGCG 319810
Query 61917 TGTAGGCGACTATCA 61931
||| || ||||| ||
Sbjct 319809 TGTTGGTGACTACCA 319795
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 397566105464240
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |