Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paraphoma_20sp._20B47-9_20[genbank_20GCA_5F001748405.1_202016-08-29] 576 sequences; 38,548,368 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq20 428 4e-115 seq230 134 1e-26 >seq20 Length=105358 Score = 428 bits (474), Expect = 4e-115 Identities = 1253/1901 (66%), Gaps = 58/1901 (3%) Strand=Plus/Plus Query 65077 ATCGACCGTGAACTGGATCGCATTAGCAGCCGCCTTGGTCCTAAGATAGTACATGCCGGT 65136 |||||| ||||| || || | | | ||| ||| | || | ||||||||||| || || Sbjct 11626 ATCGACGGTGAATTGAATGGGAGCCGAAGCAGCCATAGTGCGGAGATAGTACATTCCAGT 11685 Query 65137 CTTGAGGCCAGCACGCCAAGCATAGAAATGCATCGATGATAATTTTGCATAAT-TCGGCT 65195 ||| || ||| ||| | ||||||||||| | | || |||| | |||||| Sbjct 11686 CTTCAGCCCAAGCTTCCAGCCGGCAAAATGCATCGAAG-TGATCTTGCCCATGGTCGGCT 11744 Query 65196 CGGCCACATGCATATTCAACGACTGACTCTGATCGATGTAACG-ACCACGATCTGCAGCC 65254 | || || || ||||| |||||| ||| |||||| |||| |||||| || |||||| Sbjct 11745 CCTTCATGTGAATGTTCAAGGACTGAGACTGGTCGATG-AACGCACCACGGTCGGCAGCC 11803 Query 65255 ATGTCAATGATACGACGTCCCGATATCTCCCAGACGGTCTTGTACAGGCGACGTACCTCA 65314 || | ||||| || ||| |||||||| || ||||||||||| | | | | || Sbjct 11804 ATCTGGATGATGGTGCGCTGCGAGATCTCCCACACTGTCTTGTACAGA-GTCTT-CGTCT 11861 Query 65315 ATT--GGAATCTCCTCAATGTCCTGGACTGAACCACGACGTGCAATAATGCGATTACGCA 65372 || || || | ||| ||| | ||||| | | || || || || || || Sbjct 11862 CTTCAGGGATGTTGGGAATCCTCTGAATGGAACCGCCATCGGCGATGATACGGTTCTTCA 11921 Query 65373 TCGACTCTGACCACAAACCCAAATCGATAAGATGTTGAACCAAGTGAC---GATTGATGA 65429 | ||| ||||||| |||| || | |||| || |||| | | | |||| || Sbjct 11922 TGTTCTCAGACCACAGTCCCATGTCAACGAGATCTTT---CAAGAGCCAGGGGTTGACGA 11978 Query 65430 CTTGGAACTCGCCGGACAGTACACGACGGACATAGATGTTGGACGTGATGGGTTCAAAGG 65489 |||| |||||||||| ||| ||||| || |||||||| |||||| ||| || ||| Sbjct 11979 CTTGAAACTCGCCGGCCAGCACACGGCGAGAGTAGATGTTTGACGTGTAGGGCTCGAAGC 12038 Query 65490 ATTCAGTGTTGCCTAGAATTTGGGCAGTAGATGCAGTTGGCATGGGAGCGACCAACAATG 65549 | || | || || ||||| || | |||||||| || |||||||| || ||||| | | Sbjct 12039 ACTCGTTATTCCCAAGAATCTGAGACGTAGATGCGGTCGGCATGGGTGCAACCAAAAGAG 12098 Query 65550 AGTTTCGCAATCCGTTCATTTCAATGTTGTGACGCAATTCGTCCCAGTTCCACA--TCGG 65607 | || || | |||| | | | || |||| || | |||| | ||| | || | Sbjct 12099 AATTGCGAACGCCGTGCTGTGCGATCTTGTCCTTCAGCGAGGCCCAATCCCAGAGATCAG 12158 Query 65608 TTTATCGTCGACAT-CCACGGGCCACATATCCTGTTGCAGGG-TTCCGATACTGGCCGGT 65665 | | || ||| | |||| || | | ||| || || || || | || Sbjct 12159 TGGGT-GT-GACGTTCCACAGGTCGTA----CTGAAGCTGGCCTTGGGAGATAGGA---- 12208 Query 65666 GAACCGAGGAAACTATCGTACACTCCCTCCTCCTTGGCAA-GTTGACAGCTGGTCTCGAG 65724 ||||| | | | |||| ||| |||||| |||| || | || || | ||| Sbjct 12209 GAACCTTCGTATGTCGCGTAAGGGCCCAGCTCCTTAGCAATGTCGCAAGATGAGGT-GAG 12267 Query 65725 TGCGGCAAAATAAATGGTCTCGAAAATGCGTCGATTAAG-TTCACGTGCCTCATCGCTCT 65783 || || || ||||||||||| || | || || ||| | ||||| || Sbjct 12268 GGCCGCGTGGTAGATGGTCTCGAAGATCTGGATGTTGAGCTTCTTG-GCCTCGGGCGACT 12326 Query 65784 CGTACGGCATACCCAT---CAGGACAAAAGTGTCGGCCAGACCTTGAACTCCAATACCGA 65840 || | |||| | | ||||| | | || || ||||| ||||| || | |||| Sbjct 12327 CGAAGGGCAAGCGTAGTGCCAGGA---AGGCATCAGCGAGACCCTGAACACCGAGCCCGA 12383 Query 65841 TGGGACGATGACGCAAATTGGAACGTCTCGCCTCAGGTACAGGGTAGTAATTGATATCGA 65900 | || | ||||| |||||| || | || || ||| ||||||| |||| |||| Sbjct 12384 TAGGTCTGTGACGGAAATTGCTGCGACGTGCTTCCTCTACTGGGTAGTGGTTGACTTCGA 12443 Query 65901 TAATGCGATTCAAATTGCGTGTCACCACATGCACGA-TACGTCGCAATTGTTCGAAATCA 65959 | || ||||| ||||| || || || || || | ||| | ||||| ||| ||| Sbjct 12444 TGATCTTGTTCAAGTTGCGGGTAACAACTTGGGTGACTTCGTGGAGTTTGTT-GAAGTCA 12502 Query 65960 AAATGTTTAGGACGATCGGGAGTGCCGGACACCACAAACTTGGGAAGGGCAAGAGATGCG 66019 || | | || ||| |||| ||| ||| || || || || ||| Sbjct 12503 AACTCCCCGCGCTTAT----AGT--------CCACGAACGAGGGGAGCGCGAGCGAGGCG 12550 Query 66020 AGGTTGCAGACAGCTATCTCGTCAGGAGCGGTATACTCGACAATTTCGGTGCACAGATTA 66079 ||||| || || |||| ||| |||||||| || |||||||| || |||||||| || ||| Sbjct 12551 AGGTTACATACCGCTACCTCATCAGGAGCAGTGTACTCGACGATCTCGGTGCAGAGGTTA 12610 Query 66080 CTGCAGCGTATGGTGCCCAAATTCTGTTGATTACTCTTGCGATTGCATGCATCCTTGTAC 66139 || ||| ||||| || | ||||| ||| || ||||| || ||||| ||||| ||||| Sbjct 12611 GAGCTGCGAATGGTACCAAGATTCTTTTGGTTGCTCTTCCGGTTGCAAGCATCTTTGTAG 12670 Query 66140 ATCATGTACGGAGTGCCGGTCTCAACTTGGGACTCAATGATGGCGTGCCAAAGAGCGCGT 66199 | |||| | || | || ||||| || | ||||| |||||| | ||| || | Sbjct 12671 AGCATGAAAGGGTTACCAGTCTCCGTCTGAGCCTCAAGGATGGCATACCAGAGCTTTTGG 12730 Query 66200 GCCTTCACCGTACGTACCGCCCTACCTTTG---CGTTCGTAATGTTCGTAGAGGTGTTCG 66256 || || || | ||| || || ||| ||||||||| | | |||||| | ||| Sbjct 12731 GCGCGAACAGTC--TCCCGACC-ACGGTTGTCACGTTCGTAACGATGGTAGAGCTCCTCG 12787 Query 66257 AAGGATTCACCCCATACTTCGGACAGACATGGACACTTGTGTGGACACATCAGCGACCAA 66316 || ||||| | || |||| |||| || | || || || | |||| ||| Sbjct 12788 AACTCATCACCATACACGTCGGCAAGACCAGGGGCTTCGTTGGGGCAGAATAGCGTCCAC 12847 Query 66317 TCACCATCCTGTTCTACACGACGCATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGA 66376 ||||||| || | || || ||| || || || || ||||| || ||||||||||| Sbjct 12848 TCACCATTCTCCTGAACGCGCTTCATGAAAAGGTCTGGAATCCATAGTGCGTAGAAGAGG 12907 Query 66377 TCGCGTGCTCGTTGCTCCTCAATGCCGTGATTTTTGCGCAAGTCGAGGAACTCAAAGATG 66436 || || || || ||||| |||| || || ||||| | || ||||| | |||| Sbjct 12908 TCACGGGCACGAACTTCCTCTTTGCCATGGTTCTTGCGAAGATCAAGGAAACCGAAGACA 12967 Query 66437 TCGGCATGCCATGGTTCCAGGTAGATGGCGAACGAGCCCATACGTTTGCCGCCACCTTGG 66496 || ||||||||||| ||||||||||||||||| | ||| || ||| ||||||||| Sbjct 12968 TCAGCATGCCATGGCTCCAGGTAGATGGCGAAGGCGCCAGGGCGCTTGTTGCCACCTTGA 13027 Query 66497 TCGACGTAGCGAGCGACATTGTTGAAGACACGCAACATCGGTACGAGCCCGTTAGATTTG 66556 || || || ||||| |||||| ||||||| | ||| || | ||| ||||| ||| | Sbjct 13028 TCAACATAACGAGCCGTGTTGTTGTAGACACGAAGCATGGGAATGAGACCGTTCGATGTA 13087 Query 66557 CCATTGGTGCCGTCGATGGGGGATCCTCGTGCCCGTATATCGTGAACATTCAGACCAATA 66616 ||||||||||| ||||| || || || || ||| |||||| || ||||||||| Sbjct 13088 CCATTGGTGCCACCGATGTAAGAGCCAGTGGCACGGATACGGTGAACGTTGAGACCAATA 13147 Query 66617 CCACCGGCCGTCTTCGAGATGGCAGCACAATCGGCCACTGTCCGGAATATGCCGTCAATG 66676 || || || ||||| ||||| |||||| | ||| | | ||||| |||||| Sbjct 13148 CCGCCAGCGGTCTTGGAGATCAAGGCACAAGTCTTGAGTGTGTCGTAGATGCCATCAATG 13207 Query 66677 GAGTCACCCTTGATGGTCAGGAGGTAGCATGAACTAAGTTGGGGTTTGGGTGTGGCGGCC 66736 ||| |||| ||| | |||| |||| || | ||| || || |||||| | || Sbjct 13208 CTGTCCTCCTTCATGTCGATGAGGAAGCAGGACGACATTTGAGGATTTGGTGTGCCCGCA 13267 Query 66737 GAGAAGAGGGTGGGTGTAGCGTGCGTAAAGTAATGGCGAGACATGTAATTGTACGTCTCG 66796 ||||||||| || | |||||| || ||||| | | |||||||| | ||| ||||| Sbjct 13268 TTGAAGAGGGTAGGCGAAGCGTGTGTGAAGTACTTTTGCGACATGTAGTCGTAAGTCTCA 13327 Query 66797 ATGACAGCATCAATGTTTTCGCCATGAATCCCGAGTGCACATCGCATCAGGAGGTATTGA 66856 || | || ||||| || ||||| || |||| || ||||||| | || ||| Sbjct 13328 ATCGCCTTCTCGATGTTCTCTCCATGGATGCCGACAGCCACGCGCATCAACATGTGTTGT 13387 Query 66857 GGCCGTTCGACCAGCCGATCCTTGATATGCATTAAGTAGGAGCGTTCCAGGGTCTTGATA 66916 || || ||| | | | | ||||| | | | ||| ||||| || || ||||||| Sbjct 13388 GGGCGCTCGGCAACCTTGCCGTTGATGCGGAGAAGGTATGAGCGCTCGAGCGTCTTGAAG 13447 Query 66917 CCAAAGTACGAGTAATTGAAATCGTTAGCATGCACGATGGC 66957 |||||| || ||| ||||| || ||| |||||||| Sbjct 13448 CCAAAGAACTGGTAGTTGAAGTCACGGTCATAGACGATGGC 13488 >seq230 Length=87271 Score = 134 bits (148), Expect = 1e-26 Identities = 228/327 (70%), Gaps = 5/327 (2%) Strand=Plus/Plus Query 61090 TGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCC 61149 |||| |||||||| ||||| || || ||||||||||| | |||||| |||| | ||| Sbjct 44881 TGGCAAATGTACAAGAAGGCCGAGGCCTCCTTCTGGACCGCAGAGGAGATCGACCTCTCC 44940 Query 61150 AAAGACATGAATGACTGGGA---GCGTTT-ATCGAGCGGTGAACAACATTTCATTAAACA 61205 ||||| | | || ||| | ||| | | ||| || || | ||||| || Sbjct 44941 AAAGATCTTCACGATTGGAACAAGCGACTCAACGA-CGACGAGCGCTTCTTCATCTCCCA 44999 Query 61206 TGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACGTTT 61265 || | || ||||| || || || ||||| |||||||| ||||| | | || || || Sbjct 45000 CGTCCTCGCTTTCTTCGCTGCCTCCGACGGCATCGTCAACGAGAACCTTGTCGAGCGCTT 45059 Query 61266 CGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGA 61325 | | || || ||| | | |||||||| || ||||||||||||||||| ||||| Sbjct 45060 CTCCGGCGAAGTACAAATACCTGAGGCGCGATGCTTCTACGGCTTCCAGATCATGATGGA 45119 Query 61326 GAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGCGGGCGGA 61385 ||| ||||||||||||| ||| | | |||||||| || ||||| || |||| | | Sbjct 45120 GAACGTCCACTCGGAGACATACTCTCTCCTCATCGACACCTACATTAGCGAGCCCAAGCA 45179 Query 61386 ACGTGAACGATTGTTCAATGCCATCGA 61412 || | | ||||||||||||| || Sbjct 45180 GCGCGCATACCTGTTCAATGCCATTGA 45206 Score = 132 bits (146), Expect = 4e-26 Identities = 336/505 (67%), Gaps = 17/505 (3%) Strand=Plus/Plus Query 61434 GAAAGCGGATTGGGCCTTCAATTGGATCACCAGTACAACGGCT--ACATTTGGTGAACGA 61491 ||| || || |||||| |||| |||||| | || |||| || || || | | || Sbjct 45277 GAAGGCTGACTGGGCCCTCAAATGGATCTC-AG-ACAAGAACTCGACCTTCGCCAACCGT 45334 Query 61492 TTGCTGGCATTTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTT 61551 || | ||||| || | || ||||| | || ||||| || ||||| || | ||||| Sbjct 45335 CTGGTCGCATTCGCCGCCGTTGAGGGCATCTTCTTCAGCGGCTCGTTCGCGTCCATCTTC 45394 Query 61552 TGGTTGAAGAAACGTGGACTTATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGC 61611 ||||||||||| ||||| || ||||||||||| || ||| || ||| |||| || ||| Sbjct 45395 TGGTTGAAGAAGCGTGGCCTGATGCCCGGTCTCACATTCTCAAACGAGCTGATCTCTCGC 45454 Query 61612 GACGAGGGCATGCATTGTGATTTTGCTGTTTTGCTATTCAAACGCTATCTGGTGAA---T 61668 |||||||||||||| ||| ||||| | || || || ||| | || Sbjct 45455 GACGAGGGCATGCACACTGACTTTGCCTGCCTCCTCTT------CTCTCTCCTCAACACA 45508 Query 61669 CGTCCGTCGGAGGAGCGTGTGGGTGAGATTGTTCGTGAGGCGGTAACTATCGAACAGGAA 61728 || || |||| || | || | |||||| || | ||||| |||| Sbjct 45509 CGCCCCAGTAAGGATGCCGTCCAGGCCATCATCACTGAGGCCGTCGCGATCGAGAAGGAG 45568 Query 61729 TTTCTGACTGACGCTTTGCCCGTCTCACTCATCGGCATGAATTGTGGACTAATGTCGCAG 61788 || || || || ||| | ||| | | || | |||||||| | || ||| |||| ||| Sbjct 45569 TTCCTCACAGATGCTCTCCCCTGCGCTCTGCTTGGCATGAACTCTGCACTCATGTGCCAG 45628 Query 61789 TATATTGAATTTGTTGCCGACCGTCTGTTG--GTCGATTTGGGTATGAAGCGGATCTATA 61846 || ||||| ||||| || || || || || ||| || |||| || | ||| | Sbjct 45629 TACATTGAGTTTGTGGCTGATCGCCTTCTGCTGTCCCTT--GGTAACAACAAGTACTACA 45686 Query 61847 ATACGAAAAACCCATTTGATTTCATGGACATGATTTCGCTGGATGGCAAGACGAATTTTT 61906 | | | ||||| || || |||||||| | || || |||| |||||||| || || | Sbjct 45687 ACGCCACCAACCCCTTCGACTTCATGGAGAACATCTCTCTGGCGGGCAAGACCAACTTCT 45746 Query 61907 TCGAGAAACGTGTAGGCGACTATCA 61931 | ||||| || || || ||||| || Sbjct 45747 TTGAGAAGCGCGTCGGTGACTACCA 45771 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397565209072640