Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Penicillium_20roqueforti_20[genbank_20GCA_5F001939915.1_202017-01- 09] 1,168 sequences; 26,071,999 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq740 244 4e-62 seq1057 179 2e-42 seq107 120 1e-24 >seq740 Length=9614 Score = 244 bits (270), Expect = 4e-62 Identities = 163/191 (85%), Gaps = 3/191 (2%) Strand=Plus/Minus Query 10 GGTGGCCTAGCC-GTGTGAAGCTCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTA 68 |||| || ||| ||||||| ||||||||||||||| ||||||||||||||| ||||||| Sbjct 9577 GGTGTCCGCGCCYGTGTGAARCTCCTTCGACGAGTCRAGTTGTTTGGGAATGYAGCTCTA 9518 Query 69 AATGGGAGGTAAATTTCTTCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTA 128 |||||| || | ||||| || ||||| |||||||||| ||| ||||| ||||||||| Sbjct 9517 AATGGGYGGKAMATTTCATCYRAAGCTMAATATTGGCCGRRGACYGATAGYGCACAAGTA 9458 Query 129 GAGTGATCGAAAGATGAAAAGCACTTTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTG 188 |||| || || |||| |||||||||||| ||||||||||| |||| ||||| ||||||| Sbjct 9457 GAGTRATYGAWAGATRAAAAGCACTTTGAAAAGAGAGTTARAAAG--CGTGAWATTGTTG 9400 Query 189 AAAGGGAAGCG 199 ||||||||||| Sbjct 9399 AAAGGGAAGCG 9389 >seq1057 Length=118734 Score = 179 bits (198), Expect = 2e-42 Identities = 355/518 (69%), Gaps = 51/518 (10%) Strand=Plus/Minus Query 106 CAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAAAGAGAG 165 |||||||||||| ||||| |||||||||||||| |||||||||||||| || ||| | Sbjct 40438 CAGAGACCGATAACGCACGAGTAGAGTGATCGARRKMTGAAAAGCACTTTG-AAGGAGGG 40380 Query 166 TTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCGCTTGCAACCAGACTTGCCCGCAGTTG 225 | | || | ||| ||| |||||||| ||| || | || |||||||| || ||| | | Sbjct 40379 TCACAACGTACGGGAA-TTGTTGAAMGGG--GCTCATG--ACCAGACTCGCTCGCGG--G 40327 Query 226 CTCAACCGGCCCCTCG-GCCGGTGCAC---TC--TTCTGCGGTCAGGCCAGCATCAGCTC 279 | || |||| ||| ||||||| || || ||| | | | ||||| || | | Sbjct 40326 GTTAATCGGCAT-TCGTGCCGGTGTACAAGTCATTTCCCCCG-CGGGCCASYGTCRGTTT 40269 Query 280 GGGCGGTCGGATAAAGGCCCCGGGA--ATGTGGCCCCCTTCGGGGGGTGTTATAGCCCGG 337 |||| ||| ||| | | |||| || | ||||| | |||| |||||||||| | Sbjct 40268 GGGC---CGGTCAAACTCTC-GGGACGATATCGCCCC--TAGGGGCTTGTTATAGCCGAG 40215 Query 338 GGTGGAATGCGGCCCGCCTGGACTGAGGTCCGCGCTCCGGCTAGGATGCTGGCGTAATGG 397 ||| ||| || | | | ||| |||||| | || || ||||| Sbjct 40214 GGT-------------CCTAAACCGGAGGATGTGCTTCGGCTACG---CTAGCAGAATGG 40171 Query 398 TTGTAAGCGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGG 457 | || |||| |||||| |||| ||||| ||| |||| ||||| |||||||||| || Sbjct 40170 T---AAACGGCTTGTCTTGAAACAGGGACCGAGG-GTCTGACATCG-TGCGAGTGTTCGG 40116 Query 458 GTGTCAAACCCGTGCGCGTAATGAAAGTGAACGGAGGTGGGA---ACCCGTGAGGGTGCA 514 || | | | | || || |||||||||||| | || | | |||||| Sbjct 40115 GTATTG--CGGGGGGAAGTCGGGACAGTGAACGGAGGGAGTTCTTACACTTACAGGTGCA 40058 Query 515 CCATCGACCGATCCTGATGTCTTCGGATGGATTTGAGTAAGAGCATAGCTGTTGGGACCC 574 | |||||||||||||| |||||| || ||||||||| |||||||| ||| ||| | Sbjct 40057 CTATCGACCGATCCTGGACACTTCGGGTG-ATTTGAGTATGAGCATAGATGTKKGGAYCY 39999 Query 575 GAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAG 612 | || ||||||||||| | |||||||| ||||| || Sbjct 39998 KRARGAWGGTGAACTATGYCKGAATAGGGCGAAGCTAG 39961 >seq107 Length=48661 Score = 120 bits (132), Expect = 1e-24 Identities = 70/75 (93%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 108 GAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAAAGAGAGTT 167 ||||||||||||||||||||||||||||||||||||||| | ||||||| |||||||| | Sbjct 15579 GAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAARAKCACTTTGAAAAGAGAGKT 15638 Query 168 AAAAAGCACGTGAAA 182 ||||||| ||||||| Sbjct 15639 AAAAAGCWCGTGAAA 15653 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079974946400