Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phialocephala_20scopiformis_20[genbank_20GCA_5F001500285.1_202016- 01-07] 71 sequences; 48,876,257 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq42 387 1e-102 seq4 118 8e-22 >seq42 Length=298824 Score = 387 bits (428), Expect = 1e-102 Identities = 1241/1890 (66%), Gaps = 74/1890 (4%) Strand=Plus/Plus Query 65078 TCGACCGTGAACTGGATCGCATTAGCAGCCGCCTTGGTCCTAAGATAGTACATGCCGGTC 65137 ||||| || |||||||| | | | ||| ||| |||| | |||||||||||||| || Sbjct 241566 TCGACAGTAAACTGGATAGGAGCTGAAGCAGCCATGGTACGGAGATAGTACATGCCAGTT 241625 Query 65138 TTGAGGCCAGCACGCCAAGCATAGAAATGCATCGATGATAATTTTGCATAAT-TCGGCTC 65196 || || || ||| || ||| ||||| || | || |||| | | | || || Sbjct 241626 TTCAGACCCAACTTCCAGCCAGCGAAGTGCATAC-TGGTGATCTTGCCCATTGTGGGATC 241684 Query 65197 GGCCACATGCATATTCAACGACTGACTCTGATCGATGTAACGACCACGATCTGCAGCCAT 65256 || || || |||| ||| || || || |||||| |||||| || || ||||| Sbjct 241685 CTTCATGTGAATGTTCATCGATTGTGATTGGTCAATGTAAGCACCACGGTCAGCGGCCAT 241744 Query 65257 GT---CAATGATACGACGTCCCGATATCTCCCAGACGGTCTTGTACAGGCGACGT-ACCT 65312 | | ||| | || || || || ||||| ||||||||||| || | | | | | Sbjct 241745 TTGGACGATGGTTCGCTGT---GAGATTTCCCAAACGGTCTTGTAAAGA-GCCTTGATAT 241800 Query 65313 CAATTGGAATCTCCTCAATGTCCTGGACTGAACCACGACGTGCAATAATGCGATTACGCA 65372 || ||| || | |||| ||| | || |||| | ||||| || || || || Sbjct 241801 CAGCTGGGATGTTGGGGATGTTCTGAATCGATCCACCATCGGCAATGATACGGTTCTTCA 241860 Query 65373 TCGACTCTGACCACAAACCCAAATCGATAAGATG-TTGA---ACCAAGTGACGATTGATG 65428 | || ||||| | ||||| || | ||||| |||| |||| | | |||| | Sbjct 241861 TGTTGTCAGACCAGAGACCCATGTCAACAAGATCCTTGAGCAACCATGGG----TTGACG 241916 Query 65429 ACTTGGAACTCGCCGGACAGTACACGACGGACATAGATGTTGGACGTGATGGGTTCAAAG 65488 |||||||||||||| | || |||||||| |||||||||||||| || |||||| Sbjct 241917 ACTTGGAACTCGCCAGCAAGAACACGACGAGAGTAGATGTTGGACGTATATGGCTCAAAG 241976 Query 65489 GATTCAGTGTTGCCTAGAATTTGGGCAGTAGATGCAGTTGGCATGGGAGCGACCAACAAT 65548 | ||| || ||| |||||||| || ||||||||||| |||||||| | ||| Sbjct 241977 CACTCATTGAAGCCAAGAATTTGACTGGTGCTGGCAGTTGGCATAGGAGCGACAAGCAAG 242036 Query 65549 GAGTTTCGCAATCC--GTTCATTTCAATGTTGTGACGCAATTCGTCCCAGTTCCACATCG 65606 || || | || ||| || || || || ||| |||||| | ||| | | Sbjct 242037 CTATTGCGAAGACCATGTTGCTTG--ATTTTCTGCTTCAAGCTGTCCCAATCCCAGA--G 242092 Query 65607 GTTTATCGTCGACATCCACGGGCCACATATCCTGTTGCAGGGTTCCGATACTGGCCGGTG 65666 | | | | | | ||| ||||||||| | |||| || | ||| || | Sbjct 242093 ATCTGTTGGAGTAA--CACC--CCACATATCATACTGCAACTCGCCCTTGGAGGCAGGAG 242148 Query 65667 AACCGAGGAAACTATCGTACACTCCCTCCTCCTTGGCAAGTTGACAGCTG--GTCTCGAG 65724 |||| || | || || || || |||||||||| | || ||| | ||| Sbjct 242149 AACCCTCAAATGTCTCATAAGTGCCATCAACCTTGGCAAGCT--CAACTGAAGCAGTGAG 242206 Query 65725 TGCGGCAAAATAAATGGTCTCGAAAATGCGTCGATTAAGTTCACGTGCCTCATCGCTC-- 65782 ||||||| || ||||||||||| || | || | ||| | |||| | | || Sbjct 242207 TGCGGCATGGTAGATGGTCTCGAAGAT---TTGAAT--GTTGAGGTGCTTGGCCTCTGGA 242261 Query 65783 ---TCGTACGGCATACCCATCAGGACAAAAGTGTCGGCCAGACCTTGAACTCCAATACCG 65839 ||| | || | || | | |||| || || ||||| || || |||| || Sbjct 242262 GAGTCGAATGGAAGACGAAGAGCCAAGAAAGCATCAGCAAGACCCTGGACACCAACGGCG 242321 Query 65840 ATGGGACGATGACGCAAATTGGAACGTCTC---GCCTCAGGTACAGGGTAGTAATTGATA 65896 || || || || || || ||| | |||| || || || |||||||| || |||| | Sbjct 242322 ATAGGTCGGTGGCGGAAGTTG---CTTCTCTTGGCTTCGGGAACAGGGTAATAGTTGACA 242378 Query 65897 TCGATAATGCGATTCAAATTGCGTGTCACC-ACATGCACGA-TACGTCGCAATTGTTCGA 65954 || || || ||||| || | || || | || || || | ||| | | | | || Sbjct 242379 TCAATGATCTTGTTCAAGTT-CTTGACAACGACTTGGCAGACTTCGT-GAAGTCTCTGGA 242436 Query 65955 AATCAAAATGTTTAGGACGATCGGGAGTGCCGGACACCACAAACTTGGGAAGGGCAAGAG 66014 | ||| || || | || | | || || ||| | | ||||||||||| | Sbjct 242437 AGTCATAA-GT----GCCGTTGTTCA-TGTCG------ACATAGGTAGGAAGGGCAAGTG 242484 Query 66015 ATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGGTATACTCGACAATTTCGGTGCACA 66074 | || | ||||||||| || | ||| || ||||| ||||| ||||| || ||||| | Sbjct 242485 AAGCCAAGTTGCAGACGGCAACCTCATCTGGAGCACAGTACTCAACAATCTCAGTGCAGA 242544 Query 66075 GATTACTGCAGCGTATGGTGCCCAAATTCTGTTGATTACTCTTGCGATTGCATGCATCCT 66134 | || || || ||||| || | ||||| || || ||||| | ||||| ||||||| Sbjct 242545 GGTTCGAGCTTCGGATGGTACCGAGATTCTTCTGGTTGCTCTTTCTGTTGCAAGCATCCT 242604 Query 66135 TGTACATCATGTACGGAGTGCCGGTCTCAACTTGGGACTCAATGATGGCGTGCCAAAGAG 66194 |||| | |||| | ||| |||| ||||| || | ||| | ||||| || ||| || Sbjct 242605 TGTAAAGCATGAAGGGATTGCCAGTCTCGGTCTGAGCCTCCAGGATGGAGTACCAGAGCT 242664 Query 66195 CGCGTGCCTTCACCGTACGTACCGCCCT-ACCTTTGCGTTCGTAATGTTCGTAGAGGTGT 66253 | ||||| | || | | | |||| ||||| ||| || || || |||||||| Sbjct 242665 TTTGCGCCTTGATGGT-CTTGCGACCCTTACCTTCGCGCTCATACTGCTCGTAGAGAGCC 242723 Query 66254 TCGAAGGATTCACC-CCATA--CTTCGGACAGACATGGACACTTGTGTGGACACATCAGC 66310 ||||| |||| | ||||| | || | || | ||| |||| | || ||||||| Sbjct 242724 TCGAA---TTCATCGCCATAGACATCAGCCAAGCCTGGGCACTCATTGGGGCACATCAAA 242780 Query 66311 GACCAATCACCATCCTGTTCTACACGACGCATAAATAGATCAGGTATCCAGAGGGCGTAG 66370 | ||| || |||| || ||| || || ||| || |||||||| ||||| ||||||||| Sbjct 242781 GTCCACTCGCCATTCTTTTCAACTCGCTTCATGAAAAGATCAGGAATCCACAGGGCGTAG 242840 Query 66371 AAGAGATCGCGTGCTCGTTGCTCCTCAATGCCGTGATTTTTGCGCAAGTCGAGGAACTCA 66430 |||||||| || ||||| |||||| |||||||||| || || | || ||| |||| Sbjct 242841 AAGAGATCACGAGCTCGGACCTCCTCCTTGCCGTGATTCTTTCGAAGATCAAGGTACTCG 242900 Query 66431 AAGATGTCGGCATGCCATGGTTCCAGGTAGATGGCGAACGAGCCCATACGTTTGCCGCCA 66490 |||| ||||| |||||||| || || ||||| ||||| | || || ||| ||| Sbjct 242901 AAGACATCGGCGTGCCATGGCTCAAGATAGATAGCGAAAGCACCTGGTCGCTTGTTACCA 242960 Query 66491 CCTTGGTCGACGTAGCGAGCGACATTGTTGAAGACACGCAACATCGGTACGAGCCCGTTA 66550 |||||||| ||||| ||||| ||||||||||| || | ||| || |||| ||||| Sbjct 242961 CCTTGGTCAACGTAACGAGCAGTGTTGTTGAAGACTCGGAGCATGGGGACGATGCCGTTC 243020 Query 66551 GATTTGCCATTGGTGCCGTCGATGGGGGATCCTCGTGCCCGTATATCG-TGAACATTCAG 66609 || || ||||| || || | ||| || ||| || || || ||| ||||| || || Sbjct 243021 GAGTTACCATTTGTTCCTGCAATGTAGGCTCCGGTAGCGCGGAT-TCGATGAACGTTGAG 243079 Query 66610 ACCAATACCACCGGCCGTCTTCGAGATGGCAGCACAATCGGCCACTGTCCGGAATATGCC 66669 ||||| ||||| || |||| || || || ||| || ||| | | || || Sbjct 243080 GCCAATTCCACCAGCATTCTTGGAAATCATGGCGCAAGTCTTCAATGTGTCGTAGATACC 243139 Query 66670 GTCAATGGAGTCACCCTTGATGGTCAGGAGGTAGCATGAACTAAGTTGGGGTTTGGGTGT 66729 ||| || ||| |||| ||| | ||| | |||||| ||||||| || || || Sbjct 243140 GTCGATACTGTCCTCCTTCATGTCGACAAGGAAACATGAAGAGAGTTGGGCTTGTGGAGT 243199 Query 66730 GGCGGCCGAGAAGAGGGTGGGTGTAGCGTGCGTAAAGTAATGGCGAGACATGTAATTGTA 66789 | || | |||||| || || | ||| ||||| ||| | | | ||||| |||||| Sbjct 243200 ACCAGCAGCGAAGAGAGTTGGGGAAGCATGCGTGAAGCACTTCTGGGACATCAGATTGTA 243259 Query 66790 CGTCTCGATGACAGCATCAATGTTTTCGCCATGAATCCCGAGTGCACATCGCATCAGGAG 66849 ||||| || |||| || || | ||| || ||||| |||| ||| |||||| | | Sbjct 243260 TGTCTCAATCGCAGCCTCGATATCTTCACCGTGAATGCCGACTGCTACTCGCATAATCAT 243319 Query 66850 GTATTGAGGCCGTTCGACCAGCCGATCCTTGATATGCATTAAGTAGGAGCGTTCCAGGGT 66909 || ||| || |||||| | | | |||| | | | ||| || || || || || Sbjct 243320 GTGTTGTGGGCGTTCGCAGATCTTGCCATTGAGGCGGAGGAGGTATGATCGCTCGAGAGT 243379 Query 66910 CTTGATACCAAAGTACGAGTAATTGAAATC 66939 ||||| |||||||| |||||||||||| Sbjct 243380 CTTGAAGCCAAAGTATTGGTAATTGAAATC 243409 >seq4 Length=1888314 Score = 118 bits (130), Expect = 8e-22 Identities = 328/500 (66%), Gaps = 5/500 (1%) Strand=Plus/Minus Query 61434 GAAAGCGGATTGGGCCTTCAATTGGAT-CACCAGTACAACGGCTACATTTGGTGAACGAT 61492 ||| || || ||||| |||| ||||| || | | ||| ||||||||| | |||| Sbjct 1224638 GAAGGCCGACTGGGCTGTCAAGTGGATTCAAGACAAGAACT-CTACATTTGCTCAACGTC 1224580 Query 61493 TGCTGGCATTTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTT 61552 | | ||||| || | ||||||||| | || |||||||| || || || | ||||| | Sbjct 1224579 TCGTCGCATTCGCCGCCGTCGAGGGTATCTTCTTCAGTGGTTCCTTCGCGTCCATCTTCT 1224520 Query 61553 GGTTGAAGAAACGTGGACTTATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCG 61612 |||||||||| ||||| |||||| | ||||| |||||| |||||| | || || || | Sbjct 1224519 GGTTGAAGAAGCGTGGTCTTATGGCTGGTCTTACCTTCTCCAATGAACTCATCTCTCGTG 1224460 Query 61613 ACGAGGGCATGCATTGTGATTTTGCTGTTTTGCTATTCAAACGCTATCTGGTGAATCGTC 61672 ||||||| | || || |||||| | || ||| | || || | | || | Sbjct 1224459 ACGAGGGTCTCCACACCGACTTTGCTTGCCTTCTCTTCTCTCACT---TGAAGCACCGCC 1224403 Query 61673 CGTCGGAGGAGCGTGTGGGTGAGATTGTTCGTGAGGCGGTAACTATCGAACAGGAATTTC 61732 | || | ||| || | || || || || || || || || || Sbjct 1224402 CAAGCAAGCAAGCTGTCCAAGACGTCATTACCGAAGCTGTCGAGATTGAGCAAGAGTTCT 1224343 Query 61733 TGACTGACGCTTTGCCCGTCTCACTCATCGGCATGAATTGTGGACTAATGTCGCAGTATA 61792 ||||||| ||| | || ||||| | |||||||| | || ||| ||| || | Sbjct 1224342 TGACTGAGGCTCTTCCTTGTGCACTCCTTGGCATGAACTCGAATCTGATGAAGCAATACA 1224283 Query 61793 TTGAATTTGTTGCCGACCGTCTGTTGGTCGATTTGGGTATGAAGCGGATCTATAATACGA 61852 | || || || || || |||||| | | | | || | || | |||| || | Sbjct 1224282 TCGAGTTCGTCGCTGATCGTCTGCTTCTTGCCCTCGGCAATGAGAAGGTCTACAAGTCTG 1224223 Query 61853 AAAACCCATTTGATTTCATGGACATGATTTCGCTGGATGGCAAGACGAATTTTTTCGAGA 61912 ||||||||||| || ||||| | || ||||| | ||||||||| || || || |||| Sbjct 1224222 CCAACCCATTTGACTTTATGGAGAACATCTCGCTCGCTGGCAAGACTAACTTCTTTGAGA 1224163 Query 61913 AACGTGTAGGCGACTATCAA 61932 | || || || ||||| ||| Sbjct 1224162 AGCGCGTTGGTGACTACCAA 1224143 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397567655979440