Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phialocephala_20subalpina_20[genbank_20GCA_5F900073065.1_202016-12- 03] 205 sequences; 69,693,031 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq1 877 0.0 seq54 230 1e-57 seq117 206 1e-50 seq40 122 4e-25 seq66 95.1 5e-17 seq72 93.3 2e-16 >seq1 Length=9468 Score = 877 bits (972), Expect = 0.0 Identities = 609/685 (89%), Gaps = 7/685 (1%) Strand=Plus/Plus Query 1 TACGTGACCGGTGGCCTAGCC-GTGTGAAGCTCCTTCGACGAGTCGAGTTGTTTGGGAAT 59 || |||| ||||| | | ||| |||| |||| | |||||||||||||||||||||||||| Sbjct 2495 TATGTGATCGGTGCCGTTGCCCGTGTAAAGCGCTTTCGACGAGTCGAGTTGTTTGGGAAT 2554 Query 60 GCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAATATTGGCCAGAGACCGATAGC 119 ||||||| ||||||| |||||||||| ||||||||||||||||||||||||||||||||| Sbjct 2555 GCAGCTCAAAATGGGTGGTAAATTTCATCTAAAGCTAAATATTGGCCAGAGACCGATAGC 2614 Query 120 GCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAAAGAGAGTTAAAAAGCACGTG 179 ||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| Sbjct 2615 GCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAAAGAGAGTTAAACAGTACGTG 2674 Query 180 AAATTGTTGAAAGGGAAGCGCTTGCAACCAGACTTGCCCGCAGTTGCTCAACCG-GCCCC 238 ||||||||||||||||||||||||||||||||||||| || || | ||| ||| | | Sbjct 2675 AAATTGTTGAAAGGGAAGCGCTTGCAACCAGACTTGCGGGCGGTCGATCATCCGAGGTTC 2734 Query 239 TCGGCCGGTGCACTCTTCTGCGGTCAGGCCAGCATCAGCTCGGGCGGTCGGATAAAGGCC 298 || ||||||||||| | ||||||||||||| | | | ||| |||||||||| Sbjct 2735 TCC-CCGGTGCACTCGATCGTTCTCAGGCCAGCATCGGTTTCCGGGGTGGGATAAAGGCG 2793 Query 299 CCGGGAATGTGGCCCCCTTCGGGGGGTGTTATAGCCCGGGGTGGAATGCGGCCCGCCTGG 358 ||||||||||| | ||||| | ||||||||||| ||| ||||| ||| || Sbjct 2794 GTGGGAATGTGGCTC--TTCGGAG--TGTTATAGCCCACCGTGCAATGCCGCCACTGGGG 2849 Query 359 ACTGAGGTCCGCGCTCCGGCTAGGATGCTGGCGTAATGGTTGTAAGCGGCCCGTCTTGGA 418 || |||| ||||||| |||||||||||||||||||||||||||||||| ||||||||| | Sbjct 2850 ACCGAGGACCGCGCTTCGGCTAGGATGCTGGCGTAATGGTTGTAAGCGACCCGTCTTGAA 2909 Query 419 ACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTGTCAAACCCGTGCGCGTAA 478 |||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| Sbjct 2910 ACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTGTCAAACCCATACGCGTAA 2969 Query 479 TGAAAGTGAACGGAGGTGGGAACCCGTGAGGGTGCACCATCGACCGATCCTGATGTCTTC 538 ||||||||||||||||| || ||| | |||||||| |||||||||||||||||||||| Sbjct 2970 TGAAAGTGAACGGAGGTAAGAGCCCTTTAGGGTGCATTATCGACCGATCCTGATGTCTTC 3029 Query 539 GGATGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAA 598 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 3030 GGATGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCGTGAA 3089 Query 599 TAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGA 658 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 3090 TAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGACGTGCAAATCGA 3149 Query 659 TCGTCAAATTTGGGTATAGGGGCGA 683 |||||||||||| |||||||||||| Sbjct 3150 TCGTCAAATTTGCGTATAGGGGCGA 3174 >seq54 Length=2517943 Score = 230 bits (254), Expect = 1e-57 Identities = 172/202 (85%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 451 TGTTTGGGTGTCAAACCCGTGCGCGTAATGAAAGTGAACGGAGGTGGGAACCCGTGAGGG 510 ||||||||||||| |||| ||||||||||||||| |||||||| || ||| | ||| Sbjct 2022420 TGTTTGGGTGTCAGACCCAAACGCGTAATGAAAGTGGACGGAGGTAAGAGCCCCTTGGGG 2022479 Query 511 TGCACCATCGACCGATCCTGATGTCTTCGGATGGATTTGAGTAAGAGCATAGCTGTTGGG 570 |||| ||||| |||| |||||||||| |||||||||||||||||||||||| | | || Sbjct 2022480 TGCATTTTCGACTGATCGTGATGTCTTCTGATGGATTTGAGTAAGAGCATAGCGGCTAGG 2022539 Query 571 ACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGG 630 |||||||| ||| ||||||| | ||||||||||||||| ||||||||||||||| ||| Sbjct 2022540 ACCCGAAATATGACGAACTATACATGAATAGGGTGAAGCTGGAGGAAACTCTGGTGCAGG 2022599 Query 631 CTCGCAGCGGTTCTGGCGTGCA 652 |||||||| |||||| |||||| Sbjct 2022600 CTCGCAGCAGTTCTGACGTGCA 2022621 >seq117 Length=506254 Score = 206 bits (228), Expect = 1e-50 Identities = 147/169 (87%), Gaps = 0/169 (0%) Strand=Plus/Minus Query 512 GCACCATCGACCGATCCTGATGTCTTCGGATGGATTTGAGTAAGAGCATAGCTGTTGGGA 571 ||| |||| ||| |||||||||||| ||||||||||||||||||| |||||||| | || Sbjct 44834 GCATCATCAACCAGTCCTGATGTCTTTGGATGGATTTGAGTAAGAGAATAGCTGTGGCGA 44775 Query 572 CCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGC 631 |||||||||||||||| ||||| |||||||||||||| ||||| ||| ||| ||| ||| Sbjct 44774 CCCGAAAGATGGTGAAGTATGCGTGAATAGGGTGAAGTCAGAGCAAAATCTAGTGAGGGC 44715 Query 632 TCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGG 680 |||||||||||||| | |||||||| || ||||||| ||||||||||| Sbjct 44714 TCGCAGCGGTTCTGACATGCAAATCAATTATCAAATTCGGGTATAGGGG 44666 >seq40 Length=335963 Score = 122 bits (134), Expect = 4e-25 Identities = 92/106 (87%), Gaps = 2/106 (2%) Strand=Plus/Minus Query 363 AGGTCCGCGCTCCGGCTAGGATGCTGGCGTAATGGTTGTAAGCGGCCCGTCTTGGAACAC 422 ||| ||||||| || || |||||| | ||||||||||| | ||| ||||| ||| || | Sbjct 92042 AGGACCGCGCTTCG-CTGGGATGC-GCCGTAATGGTTGCAGGCGACCCGTTTTGAGACCC 91985 Query 423 GGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTGTCAAACCC 468 |||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 91984 GGACCAAGGAGTCTCACATCTATGCGAGTGTTTGGGTGTCAAACCC 91939 >seq66 Length=3360220 Score = 95.1 bits (104), Expect = 5e-17 Identities = 95/121 (79%), Gaps = 7/121 (6%) Strand=Plus/Minus Query 300 CGGGAATGTGGCCCCCTTCGGGGGGTGTTATAGCCCGGGGTGGAATGCGGCCCGCCTGGA 359 |||||||||||| | ||||| | ||||||||||| ||| ||| | || | | | Sbjct 2331599 CGGGAATGTGGCTC--TTCGGAG--TGTTATAGCCCATCGTGCAATCCCACCACCAGGAA 2331544 Query 360 CTGAGGTCCGCGCTCCGGCTAGGATGCTGGCGTAATGGTTGTAAGCGGCCCGTCTTGGAA 419 | || |||||| |||||||||||||||||||||||||||||||| ||||||||| || Sbjct 2331543 CGGAA---CGCGCTTCGGCTAGGATGCTGGCGTAATGGTTGTAAGCGACCCGTCTTGAAA 2331487 Query 420 C 420 | Sbjct 2331486 C 2331486 Score = 78.8 bits (86), Expect = 4e-12 Identities = 49/53 (92%), Gaps = 0/53 (0%) Strand=Plus/Minus Query 113 CGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAAAGAGAG 165 |||||||||||||| ||||||||||||||| ||||||| |||||||||| ||| Sbjct 2330920 CGATAGCGCACAAGCAGAGTGATCGAAAGACGAAAAGCGCTTTGGAAAGGGAG 2330868 >seq72 Length=525428 Score = 93.3 bits (102), Expect = 2e-16 Identities = 63/71 (89%), Gaps = 0/71 (0%) Strand=Plus/Plus Query 516 CATCGACCGATCCTGATGTCTTCGGATGGATTTGAGTAAGAGCATAGCTGTTGGGACCCG 575 ||||||||||||||||||||||| || |||||| ||||||||| |||| |||||||||| Sbjct 208716 CATCGACCGATCCTGATGTCTTCTAATAGATTTGGGTAAGAGCAAAGCTATTGGGACCCG 208775 Query 576 AAAGATGGTGA 586 || ||||| || Sbjct 208776 AATGATGGCGA 208786 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079995602750