Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phoma_20herbarum_20[genbank_20GCA_5F001599375.1_202016-03-01] 218 sequences; 39,263,577 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq9 311 7e-80 seq14 143 2e-29 >seq9 Length=1465676 Score = 311 bits (344), Expect = 7e-80 Identities = 642/951 (68%), Gaps = 22/951 (2%) Strand=Plus/Minus Query 66001 GGGAAGGGCAAGAGATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGGTATACTCGAC 66060 ||| || |||| ||| || |||||||||||||| | ||| || ||||| || ||||||| Sbjct 1037268 GGGGAGAGCAACAGAGGCCAGGTTGCAGACAGCGACCTCATCGGGAGCAGTGTACTCGAT 1037209 Query 66061 AATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGATTACTCTTGCG 66120 ||||| |||||||| || || ||| ||||| || | |||| || || ||||| | Sbjct 1037208 GATTTCAGTGCACAGGTTGGAGCTGCGGATGGTACCAAGGTTCTTCTGGTTGCTCTTCCT 1037149 Query 66121 ATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTGGGACTCAATGAT 66180 ||| ||||||||||| | |||| | || | |||||||| || | ||| | || Sbjct 1037148 GTTGGCAGCATCCTTGTAGAGCATGAAGGGGTTACCGGTCTCGGTCTGAGCCTCGAGAAT 1037089 Query 66181 GGCGTGCCAAAG------AGCGCGTGCCTTCACCGTACGTACC--GCCCTACCTTTGCGT 66232 ||||| ||| || ||| || | || | ||| || |||| |||| Sbjct 1037088 GGCGTACCAGAGCTTCTGAGCACGGACAGTCTC---ACGACCCTTGCCCG--CTTTC--- 1037037 Query 66233 TCGTAATGTTCGTAGAGGTGTTCGAAGGATTCACCCCATACTTCGGACAGACATGGACAC 66292 ||||| | ||||| ||| |||| ||||| | || || | || | || ||| Sbjct 1037036 TCGTACTTCTCGTACAGGGCGACGAACTCGTCACCGTAGACGTCAGCGAGGCCAGGGCAC 1036977 Query 66293 TTGTGTGGACACATCAGCGACCAATCACCATCCTGTTCTACACGACGCATAAATAGATCA 66352 | || || ||||| || | ||| || || | ||| | ||||| ||| || ||||| Sbjct 1036976 TCGTTGGGGCACATGAGTGTCCACTCGCCGTTCTGCTGGACACGCTCCATGAAGAGATCG 1036917 Query 66353 GGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAATGCCGTGATTTTTG 66412 || ||||| || ||||||||||||||||| || || |||||| ||||||| || || Sbjct 1036916 GGGATCCACAGAGCGTAGAAGAGATCGCGGGCGCGAACCTCCTCCTTGCCGTGGTTCTTC 1036857 Query 66413 CGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTAGATGGCGAACGAG 66472 | | ||||||||| | |||| ||| || |||||||| || |||||||||||||| | Sbjct 1036856 CTGAGGTCGAGGAAGCCGAAGACGTCAGCGTGCCATGGCTCGAGGTAGATGGCGAAGGCA 1036797 Query 66473 CCCATACGTTTGCCGCCACCTTGGTCGACGTAGCGAGCGACATTGTTGAAGACACGCAAC 66532 || || ||| |||||| |||||||||||||| || |||||| ||||||| | | Sbjct 1036796 CCGGGGCGCTTGTTGCCACCCTGGTCGACGTAGCGGGCAGTGTTGTTGTAGACACGGAGC 1036737 Query 66533 ATCGGTACGAGCCCGTTAGATTTGCCATTGGTGCCGTCGATGGGGGATCCTCGTGCCCGT 66592 || || | ||| ||||| ||| | || ||||| || ||||| ||| || || || Sbjct 1036736 ATGGGGATGAGACCGTTCGATGTTCCGTTGGTTCCTCCGATGTAGGAGCCAGTGGCACGA 1036677 Query 66593 ATATCGTGAACATTCAGACCAATACCACCGGCCGTCTTCGAGATGGCAGCACAATCGGCC 66652 || ||| || || || ||||| || || || ||||| ||||| || || || | Sbjct 1036676 ATGCGGTGGACGTTGAGGCCAATTCCGCCAGCAGTCTTGGAGATCAACGCGCA---GGTC 1036620 Query 66653 ---ACTGTCCGGAATATGCCGTCAATGGAGTCACCCTTGATGGTCAGGAGGTAGCATGAA 66709 | ||| | | ||||| || ||| ||| |||| ||| | |||| |||| || Sbjct 1036619 TTGAGTGTGTCGTAGATGCCCTCGATGCTGTCCTCCTTCATGTCGATGAGGAAGCAGGAC 1036560 Query 66710 CTAAGTTGGGGTTTGGGTGTGGCGGCCGAGAAGAGGGTGGGTGTAGCGTGCGTAAAGTAA 66769 | || || ||||||| |||| |||||| || || | ||||| || ||||| Sbjct 1036559 GACATCTGCGGCGAGGGTGTGCCGGCGTTGAAGAGCGTCGGCGAGGCGTGTGTGAAGTAC 1036500 Query 66770 TGGCGAGACATGTAATTGTACGTCTCGATGACAGCATCAATGTTTTCGCCATGAATCCCG 66829 | | |||||||| | ||| ||||||||| | || |||| || || || ||| Sbjct 1036499 TTCTGCGACATGTAGTCGTATGTCTCGATGGCCTTCTCGATGTCCTCCATGTGGATGCCG 1036440 Query 66830 AGTGCACATCGCATCAGGAGGTATTGAGGCCGTTCGACCAGCCGATCCTTGATATGCATT 66889 | ||| ||||| || | || || || || ||| | | | | ||||| | | Sbjct 1036439 ACGGCAACACGCATGAGCATGTGCTGCGGGCGCTCGGCGACCTTGCCGTTGATGCGGAGC 1036380 Query 66890 AAGTAGGAGCGTTCCAGGGTCTTGATACCAAAGTACGAGTAATTGAAATCG 66940 | ||| ||||| || || ||||||| || ||| || ||| ||||| ||| Sbjct 1036379 AGGTATGAGCGCTCGAGCGTCTTGAAGCCGAAGAACTGGTAGTTGAAGTCG 1036329 Score = 150 bits (166), Expect = 1e-31 Identities = 336/494 (68%), Gaps = 14/494 (3%) Strand=Plus/Minus Query 65078 TCGACCGTGAACTGGATCGCATTAGCAGCCGCCTTGGTCCTAAGATAGTACATGCCGGTC 65137 ||||| |||||||| || | || ||| ||| |||| | || ||||||||||||||| Sbjct 1038173 TCGACAGTGAACTGAATGGGTGCAGAAGCAGCCATGGTACGGAGGTAGTACATGCCGGTC 1038114 Query 65138 TTGAGGCC-AGCACGCCAAGCATAGAAATGCATCGATGATAATTTTGCATA-ATTCGGCT 65195 ||||| || ||| ||| || ||| ||||| |||| | || |||| | | | |||| Sbjct 1038113 TTGAGACCGAGCTT-CCAGCCAGCGAAGTGCATGGATG-TGATCTTGCCCATAGTAGGCT 1038056 Query 65196 CGGCCACATGCATATTCAACGACTGACTCTGATCGATGTAACGACCACGATCTGCAGCCA 65255 | || || || |||| |||||| |||||||||| | |||||| || || |||| Sbjct 1038055 CCTTCATGTGGATGTTCAGGGACTGAGACTGATCGATGAAGGCACCACGGTCAGCGGCCA 1037996 Query 65256 TGTCAATGATACGACGTCCCGATATCTCCCAGACGGTCTTGTACAGGCGACGT-ACCTCA 65314 | | ||||| ||| ||| |||||||||||||||||||||| | | | | | ||| Sbjct 1037995 TCTGGATGATGGTACGCTGCGAGATCTCCCAGACGGTCTTGTACA-GAGTCTTGATCTCG 1037937 Query 65315 ATTGGAATCTCCTCAATGTCCTGGACTGAACCACGACGTGCAATAATGCGATTACGCATC 65374 || || | ||| ||| | ||||||| || || ||||| || ||| Sbjct 1037936 TCAGGGATGTTGGGGATGCGCTGAATGGAACCACCCTCAGCGATGATGCGGTTCTTCATG 1037877 Query 65375 GACTCTGACCACAAACCCAAATCGATAAGAT-GTTG---AACCAAGTGACGATTGATGAC 65430 ||| | ||| | ||||| |||| || | ||| ||||| | | |||| || Sbjct 1037876 TTCTCGGTCCAGAGACCCATGTCGACCAGGTCCTTGAGCAACCAGG----GGTTGACAAC 1037821 Query 65431 TTGGAACTCGCCGGACAGTACACGACGGACATAGATGTTGGACGTGATGGGTTCAAAGGA 65490 |||||||| || | || || || || |||||||| || ||| ||| || ||| | Sbjct 1037820 CTGGAACTCACCAGCAAGCACGCGGCGAGAGTAGATGTTCGATGTGTAGGGCTCGAAGCA 1037761 Query 65491 TTCAGTGTTGCCTAGAATTTGGGCAGTAGATGCAGTTGGCATGGGAGCGACCAACAATGA 65550 || ||||||| ||||| |||| || || ||||| |||||||| ||||| | | || Sbjct 1037760 CTCGTTGTTGCCGAGAATCTGGGAGGTGGAGGCAGTAGGCATGGGCGCGACGAGTAGCGA 1037701 Query 65551 GTTTCGCAATCCGT 65564 ||| || | |||| Sbjct 1037700 GTTGCGGACACCGT 1037687 >seq14 Length=1191321 Score = 143 bits (158), Expect = 2e-29 Identities = 290/425 (68%), Gaps = 9/425 (2%) Strand=Plus/Plus Query 61510 GTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGA 61569 || |||||| | || |||||||| || || || | ||||| ||| |||| || ||||| Sbjct 900732 GTTGAGGGTATCTTCTTCAGTGGTTCCTTCGCGTCCATCTTCTGGCTGAAAAAGCGTGGT 900791 Query 61570 CTTATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGGGCATGCATTGT 61629 || ||||||||||| || ||| ||| ||| | || || || || ||||||||||| Sbjct 900792 CTCATGCCCGGTCTCACATTCTCCAACGAGCTCATCTCTCGTGATGAGGGCATGCACACA 900851 Query 61630 GATTTTGCTGTTTTGCTATTCAAACGCTATCTGGTGAATCGTCCGTCGGAGGAGCGTGTG 61689 |||||||| ||| | || | || || || ||||| ||||| ||| Sbjct 900852 GATTTTGCCTGCTTGTTGTT--TTCTCT-CCTCAACAACCGTCCCAGCAAGGAGGCTGTC 900908 Query 61690 GGTGAGATTGTTCGTGAGGCGGTAACTATCGAACAGGAATTTCTGACTGACGCTTTGCCC 61749 | | || | ||||| || || ||||| ||||| || ||| | |||||| | ||| Sbjct 900909 GAGGCTATCATCACCGAGGCTGTCACAATCGAGCAGGAGTTCCTGTCAGACGCTCTTCCC 900968 Query 61750 GTCTCACTCATCGGCATGAATTGTGGACTAATGTCGCAGTATATTGAATTTGTTGCCGAC 61809 | || |||||||||| ||| |||| ||||| || || || ||||| ||| Sbjct 900969 TGTGCTCTGCTCGGCATGAACGCCACACTCATGTGTCAGTACATCGAGTTCGTTGCTGAC 901028 Query 61810 CGTCTG---TTGGTCGATTTGGGTATGAAGCGGATCTATAATACGAAAAACCCATTTGAT 61866 |||||| |||| | |||| | | | ||| || | | ||||| || ||| Sbjct 901029 CGTCTGCTCTTGGCC--CTTGGCAACCCCAAGTA-CTACAACGCTACCAACCCCTTCGAT 901085 Query 61867 TTCATGGACATGATTTCGCTGGATGGCAAGACGAATTTTTTCGAGAAACGTGTAGGCGAC 61926 |||||||| | |||||||| | |||||||| ||||| |||||||| ||||| || ||| Sbjct 901086 TTCATGGAGAACATTTCGCTCGCCGGCAAGACCAATTTCTTCGAGAAGCGTGTCGGTGAC 901145 Query 61927 TATCA 61931 || || Sbjct 901146 TACCA 901150 Score = 132 bits (146), Expect = 4e-26 Identities = 207/293 (71%), Gaps = 5/293 (2%) Strand=Plus/Plus Query 61090 TGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCC 61149 |||| |||||||| ||||| || ||||| |||||||| | |||||| ||||| | ||| Sbjct 900259 TGGCAGATGTACAAGAAGGCCGAGGCTTCTTTCTGGACCGCTGAGGAGATCGATCTCTCC 900318 Query 61150 AAAGACATGAATGACTGGGA---GCGTTT-ATCGAGCGGTGAACAACATTTCATTAAACA 61205 || ||| | | |||||| | ||| | | || || || | ||||| || Sbjct 900319 AAGGACCTTCACGACTGGAACAGGCGCCTCAATGA-CGACGAGCGCTTCTTCATCTCCCA 900377 Query 61206 TGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACGTTT 61265 || | || ||||| ||||| || || || || ||||| ||||| | | || || || Sbjct 900378 CGTTCTCGCCTTCTTCGCCGCCTCCGATGGCATTGTCAACGAGAACCTTGTCGAGCGCTT 900437 Query 61266 CGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGA 61325 | | ||||| ||| | | ||||| ||||| ||||||||||||||||| ||||| Sbjct 900438 CTCCGGCGAGGTTCAAATCCCCGAGGCCCGTTGCTTCTACGGCTTCCAGATCATGATGGA 900497 Query 61326 GAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGC 61378 ||| |||||| | |||| ||| | | |||||||| || |||||||| |||| Sbjct 900498 GAACGTCCACGCCGAGACATACTCTCTCCTCATCGACACATACATCAGCGAGC 900550 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397566943711520