Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phyllosticta_20citricarpa_20[genbank_20GCA_5F001604955.1_202016-03- 31] 5,748 sequences; 31,127,197 total letters Query= NC_027867.1 Length=651523 Score E Sequences producing significant alignments: (Bits) Value seq2360 96.9 1e-14 seq4078 86.0 3e-11 >seq2360 Length=31885 Score = 96.9 bits (106), Expect = 1e-14 Identities = 338/518 (65%), Gaps = 15/518 (3%) Strand=Plus/Plus Query 448640 GCGCCGTAGGACTTGAAGGAGACGCGCTCCATGTCGCCCAATCGGAGCCCGCCGTGTCGC 448699 |||||||| | ||| | || |||||||||| || || | || |||||||||| || Sbjct 9086 GCGCCGTACGCGATGAGGCAGTCGCGCTCCATTTCTCCGAGGCGCAGCCCGCCGTCGCGG 9145 Query 448700 -AACTTGCCCTCGGTGGGCTGCCGCGTGAGGAGCGAGTACGGTCCCCTCTGCCGCGTGTG 448758 ||| | || || || |||||||||||||||| | |||||| | | ||| |||| Sbjct 9146 GAACGT-CCTTCTGTTGGCTGCCGCGTGAGGATGGCCCGCGGTCCGCGCGCCCGGCTGTG 9204 Query 448759 CATCTTCTCCGAGGCCAGTTGCTTGAGGCTCTGGAAGAAGAAGGGCGCGTAGAACATGCG 448818 |||||| || ||| |||||||| | ||| || ||| |||| || |||| | | Sbjct 9205 CATCTTGTCTTGCACCATGTGCTTGAGCTTTTGGTAGTAGATGGGCCCGAAGAAGACGTA 9264 Query 448819 GCACGGCATCATCTCGCCCGTCTGGCCGTCCGTAAAGATCGTCTTGCCCTCGGGCTCGAT 448878 ||||| |||||||||| ||| || | || ||||| || | | | Sbjct 9265 CGCCGGCAGGCTCTCGCCCGTGATGCCCGATGTCAGCATATCCTTGC---CGCTGTAGTT 9321 Query 448879 CATGCCCCTCTCCTCC---ATGTAGTCCATGAGCTCGGCCACGGAGAGGTCCGAAAAGGC 448935 | ||| |||| | || | ||||| |||| | ||| | | |||||| Sbjct 9322 GAAGCCGTGCTCCAGCAGGATTTGCGACATGATTTCGGGCTTGGACCCGCC---AAAGGC 9378 Query 448936 CGTGCCGTCCTGCGGCAAGCCGCTCTCACAGCCCGTGATGGCCTGGAGGGCCTCGAGCAA 448995 ||||||| ||| | ||| | | ||||| | || || ||| |||| Sbjct 9379 TGTGCCGTATTGCAGTTCGCCCTTGACGACGCCCGCTTTTCCCGACAGCAGCTCCAGCAT 9438 Query 448996 CATGGCGTAGGTCATGCGCGACGGGTAGGCATGCGGGTTCATGATGATGT-CGGGCGTCT 449054 | || || ||||||||||||||| | | ||||||||||||||||||| ||||| | Sbjct 9439 CTTGCCGACTGTCATGCGCGACGGGAAACCGTGCGGGTTCATGATGATGTCCGGGCAGAT 9498 Query 449055 CGCCGGCCGCGTTGAAGGGCATGTC-CTCGGGGTTGACCACCAGGCCGTTGACGCCCTTC 449113 ||| |||||||||||||||| || | || | | | || ||| |||||| Sbjct 9499 -GCCCTGGTCGTTGAAGGGCATGTCGATCTGCTCTG-CAATAATACCCACGACACCCTTC 9556 Query 449114 TGGCCGTGGCGGCTGCAGAACTTGTCCCCCTGCTCGGG 449151 || || ||||| | |||||||||| || |||| || Sbjct 9557 TGACCATGGCGCGAGGAGAACTTGTCGCCGAGCTCTGG 9594 >seq4078 Length=18759 Score = 86.0 bits (94), Expect = 3e-11 Identities = 104/142 (73%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 349074 CGTCGAGAATCTCCTTGAGTCTGGGCATGCCCAGGGTCACGTTCTTGGCCGCGACGCCGG 349133 ||| |||||| ||||| || | || | ||||| || |||||||| | | ||| || | Sbjct 9657 CGTTGAGAATTTCCTTCAGACGAGGGACACCCAGTGTAACGTTCTTTGAAGAGACACCAG 9598 Query 349134 CAAAGTGGAAGGTCTGGAGGGTCAACTGCGTGAGGGGCTCGCCGATGCACTGGCCCGCGA 349193 |||||||||| || | ||| |||| ||| || ||| || || || |||| | || | Sbjct 9597 CAAAGTGGAACGTGTTGAGCGTCATCTGGGTAGCGGGTTCACCAATAGACTGCGCAGCCA 9538 Query 349194 GGATGCCTACCATCTCGCCGGG 349215 ||| || |||||||||||||| Sbjct 9537 GGACACCGACCATCTCGCCGGG 9516 Score = 84.2 bits (92), Expect = 9e-11 Identities = 122/170 (72%), Gaps = 3/170 (2%) Strand=Plus/Minus Query 351104 TCGTCTCCGTCAAAGTCGGCGTTGTAGGGCTGGGTGACCGACGGGTTGATGCCGATGGTG 351163 ||||| ||||| |||||||||||||| || ||| ||||| |||||| || || |||| Sbjct 7804 TCGTCGCCGTCGAAGTCGGCGTTGTAAGGAGAGGTAACCGAAAGGTTGAGGCGGAAGGTG 7745 Query 351164 TAGCCCCGCGGGTTGCGCCTCACGCGGTGCACCATGATGGACCCGTTGTGGAGCGTGGGC 351223 || | || | || | |||||||| |||| |||||| | ||||| |||| ||| Sbjct 7744 GAGTACGGC--ATCACG-CGAACGCGGTGACCCATCATGGACTCCTTGTGCAGCGAAGGC 7688 Query 351224 TGGCGATTGTGGATGATGATGTCGCCATCGCGCAAGTGCCTCTCCACCTT 351273 || || ||| ||| |||| ||||| || | ||| | ||| ||||| Sbjct 7687 TGACGGTTGAAGATAATGAAATCGCCGTCCACGATGTGACGCTCGACCTT 7638 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2084581922062904