Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudogymnoascus_20sp._20VKM_20F- 3775_20[genbank_20GCA_5F000750715.1_202014-09-09] 6,880 sequences; 28,506,885 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq6801 823 0.0 seq1781 179 1e-42 >seq6801 Length=5450 Score = 823 bits (912), Expect = 0.0 Identities = 505/537 (94%), Gaps = 3/537 (1%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 |||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 5358 CTTTTGTTCTACTGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 5299 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 5298 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCTTCAACCCGGATC 5239 Query 127 GGCCCGCGAAGGACCTTAACGCCAGAAAATGGTCGGTGAAGACCAGTTCCGCTTCATTGA 186 |||||||||||||||||| || |||| ||| | ||| |||||||||||||||||| Sbjct 5238 AGCCCGCGAAGGACCTTAATGCTAGAAGTTGGGCTTTGACACCCAGTTCCGCTTCATTGA 5179 Query 187 TTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGGCTCCCACTTA 246 ||||||||||||| ||||||||||||||||||||| |||||||| |||||||| || Sbjct 5178 ATAAGTAAAAAAACAATAAGGGTAGTGGTATTTCACCGGCGCCGAA---GCTCCCACCTA 5122 Query 247 TTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTC 306 ||||||||| | | ||| |||||||| ||| ||||||||||||||||||||||||||| Sbjct 5121 TTCTACACCCCCTATGTCTTTTCACAATGTCAAACTAGAGTCAAGCTCAACAGGGTCTTC 5062 Query 307 TTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATA 366 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 5061 TTTCCCCGCTGATTCTGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATA 5002 Query 367 GGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATT 426 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 5001 GGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATT 4942 Query 427 TGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCT 486 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 4941 TGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCT 4882 Query 487 TCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACATCACTTTCTG 543 ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 4881 TCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACACCACTTTCTG 4825 >seq1781 Length=892 Score = 179 bits (198), Expect = 1e-42 Identities = 117/129 (91%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 53 ACACCTGCGTTATGGTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGT 112 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 502 ACACCTGCGTTATGGTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGT 561 Query 113 CATCAACCCGGATCGGCCCGCGAAGGACCTTAACGCCAGAAAATGGTCGGTGAAGACCAG 172 | |||||||||||| |||||||||||||||||| || |||| ||| | ||| |||| Sbjct 562 CTTCAACCCGGATCAGCCCGCGAAGGACCTTAATGCTAGAAGTTGGGCTTTGACACCCAG 621 Query 173 TTCCGCTTC 181 ||||||||| Sbjct 622 TTCCGCTTC 630 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1635087498240