Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudogymnoascus_20sp._20VKM_20F- 3775_20[genbank_20GCA_5F000750715.1_202014-09-09] 6,880 sequences; 28,506,885 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq499 282 3e-71 seq3646 172 4e-38 >seq499 Length=3129 Score = 282 bits (312), Expect = 3e-71 Identities = 640/953 (67%), Gaps = 12/953 (1%) Strand=Plus/Plus Query 65993 ACAAACTTGGGAAGGGCAAGAGATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGGTA 66052 ||| || | || |||||||| ||||| | ||| || || || | ||| |||||||| | Sbjct 109 ACATACGTTGGCAGGGCAAGGGATGCCAAGTTACACACGGCAACCTCATCAGGAGCAGAG 168 Query 66053 TACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGATTA 66112 ||||||||||| || ||||| || || || ||| ||||| || | |||| || || Sbjct 169 TACTCGACAATCTCTGTGCAAAGGTTGGAGCTGCGAATGGTACCGAGGTTCTTCTGGTTG 228 Query 66113 CTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTGGGAC 66172 |||||||| ||||| ||||||||||||| |||| | || | || |||||| ||| | | Sbjct 229 CTCTTGCGGTTGCAAGCATCCTTGTACAGCATGAAAGGGTTTCCTGTCTCAGTTTGAGCC 288 Query 66173 TCAATGATGGCGTGCCAAAGAGCGCGTGCCTTCACCGTACGTACCGCCCTACCTTTGCGT 66232 || | |||| || |||||| | ||||| | || | | | |||| | | | | Sbjct 289 TCGAGAATGGAGTACCAAAGCTTCTGGGCCTTGATGGT-CTTGCGACCCTTTCCATCCCT 347 Query 66233 -TCGTAATGTTCGTAGAGGTGTTCGAAGGATTCACCCCATACTTCGGACAGACATGGACA 66291 ||||| ||||| || || || || || | || || | || | || || Sbjct 348 CTCGTAGCTCTCGTAAAGCGCCTCAAACTCATCGCCGTAAACGTCAGCCAACCCAGGGCA 407 Query 66292 CTTGTGTGGACACATCAGCGACCAATCACCATCCTGTTCTACACGACGCATAAATAGATC 66351 || || || ||||| || | ||| ||||| | || || ||||| ||| || ||||| Sbjct 408 CTCGTTGGGGCACATGAGGGTCCAGTCACCGTTCTTCTCAACACGCTTCATGAAGAGATC 467 Query 66352 AGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAATGCCGTGATTTTT 66411 || |||||||| |||||||| | || || || || ||||| ||||||| || || Sbjct 468 CGGGATCCAGAGAGCGTAGAACAAGTCACGGGCACGGACTTCCTCCTTGCCGTGGTTCTT 527 Query 66412 GCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTAGATGGCGAACGA 66471 | |||||| ||||||||||||| || || |||||||| || | |||||||||||| | Sbjct 528 TCTCAAGTCTAGGAACTCAAAGACATCCGCGTGCCATGGCTCGACGTAGATGGCGAAAGC 587 Query 66472 GCCCATACGTTTGCCGCCACCTTGGTCGACGTAGCGAGCGACATTGTTGAAGACACGCAA 66531 || || ||| |||||||||||| ||||| | || ||||||||||| || | Sbjct 588 ACCAGGGCGCTTGTTGCCACCTTGGTCAACGTATCTTGCAGTGTTGTTGAAGACGCGGAG 647 Query 66532 CATCGGTACGAGCCCGTTAGATTTGCCATTGGTGCCGTCGATGGGGGATCCTCGTGCCCG 66591 ||| || |||| || || || || || ||||| || ||||| | || || || Sbjct 648 CATGGGAACGATACCATTCGAGTTTCCGTTGGTACCAGCGATGTATGCACCAGTGGCACG 707 Query 66592 TATATCGTGAACATTCAGACCAATACCACCGGCCGTCTTCGAGATGGCAGCACAATCGGC 66651 ||| || | |||| || ||||| ||||| ||||| ||||| ||||| || Sbjct 708 GATACGATGGATGTTCAATCCGATACCTCCGGCGGTCTTTGAGATCATGGCACA---GGT 764 Query 66652 C---ACTGTCCGGAATATGCCGTCAATGGAGTCACCCTTGATGGTCAGGAGGTAGCATGA 66708 | | ||| | || || ||||| ||| |||| ||| | | | |||| || Sbjct 765 CTTGAGTGTGTCATAGATACCCTCAATACTGTCCTCCTTCATGTCGACCAAGAAGCAGGA 824 Query 66709 ACTAAGTTGGGGTTTGGGTGTGGCGGCCGAGAAGAGGGTGGGTGTAGCGTGCGTAAAGTA 66768 || || | | ||||| |||| |||||| || || | |||||| || ||||| Sbjct 825 CGACAGCTGAGCCTGTGGTGTACCGGCATTGAAGAGTGTTGGGGAAGCGTGTGTGAAGTA 884 Query 66769 ATGGCGAGACATGTAATTGTACGTCTCGA-TGACAGCATCAATGTTTTCGCCATGAATCC 66827 | | ||||||| ||||| ||||||| || | | ||||| | ||||| ||||| | Sbjct 885 TTTGGAAGACATGAGGTTGTATGTCTCGATTGTCTTC-TCAATATCCTCGCCGTGAATGC 943 Query 66828 CGAGTGCACATCGCATCAGGAGGTATTGAGGCCGTTCGACCAGCCGATCC-TTGATATGC 66886 | | ||| ||||| | | || || |||| || | || || ||| | | | | Sbjct 944 CCACCGCAACACGCATAATCATGTGCTGCGGCCTCTC-AGCAACCTTTCCATCAAGACGG 1002 Query 66887 ATTAAGTAGGAGCGTTCCAGGGTCTTGATACCAAAGTACGAGTAATTGAAATC 66939 | | || || | ||||| ||||||| |||||||| ||| |||||||| Sbjct 1003 AGAAGATACGATCTCTCCAGTGTCTTGAAGCCAAAGTATTGGTAGTTGAAATC 1055 >seq3646 Length=8928 Score = 172 bits (190), Expect = 4e-38 Identities = 367/540 (68%), Gaps = 11/540 (2%) Strand=Plus/Minus Query 61087 ATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTG 61146 || |||| |||||||| |||||||| || || |||||||| | |||||| | ||| | Sbjct 1744 ATCTGGCAGATGTACAAGAAGGCGGAGGCCTCTTTCTGGACAGCAGAGGAGATTGATCTC 1685 Query 61147 TCCAAAGACATGAATGACTGGGAG---CGTTT-ATCGAGCGGTGAACAACATTTCATTAA 61202 ||||| ||| | | |||||| | || | | ||| || ||| | | ||||| Sbjct 1684 TCCAAGGACCTCCACGACTGGAACAACCGCCTCAACGA-CGATGAGCGCTACTTCATCTC 1626 Query 61203 ACATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACG 61262 || || | || ||||| ||||| |||||||| || ||||| ||||| | | || || Sbjct 1625 CCACGTTCTCGCTTTCTTCGCCGCGTCGGACGGAATTGTCAACGAGAACCTCCTCGAGCG 1566 Query 61263 TTTCGCGCAG-GAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCA 61321 ||| |||| ||||| ||| | | || || || || |||||||| ||||| ||| | Sbjct 1565 CTTCA-GCAGCGAGGTCCAAATCCCAGAAGCCCGCTGCTTCTACGGTTTCCAAATTATGA 1507 Query 61322 TGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGCGGG 61381 | ||||| | ||| | |||| ||| | ||||| || || ||||||| ||||| | Sbjct 1506 TCGAGAACATTCACGCCGAGACATACTCCCTCCTCATTGACACATACATCAAGGAGCAAG 1447 Query 61382 CGGAACGTGAACGATTGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGG 61441 | |||| | | ||||||||||||||||| || || | ||| ||| || | Sbjct 1446 CTCAACGCACATACCTCTTCAATGCCATCGAGACCATTCCTTGCATCAAGAAGAAGGCCG 1387 Query 61442 ATTGGGCCTTCAATTGGATCACCAGTACAACG--GCTACATTTGGTGAACGATTGCTGGC 61499 ||||||| ||| ||||| ||| |||| | |||| || | | || | | || Sbjct 1386 ATTGGGCTGTCAGGTGGAT--CCAAGACAAGGATTCTACCTTCGCCCAGCGTCTCGTTGC 1329 Query 61500 ATTTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAA 61559 || || | || |||||| | || ||| ||| || || || | || || ||| | || Sbjct 1328 CTTCGCTGCCGTTGAGGGTATTTTCTTCTCTGGCTCCTTCGCATCCATTTTCTGGCTTAA 1269 Query 61560 GAAACGTGGACTTATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGGG 61619 ||| ||||| || ||| | || || |||||| || ||| | || || ||||||||||| Sbjct 1268 GAAGCGTGGCCTCATGGCTGGCCTTACCTTCTCTAACGAGCTCATTTCCCGCGACGAGGG 1209 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397534663923200