Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pyrenochaeta_20sp._20DS3sAY3a_20[genbank_20GCA_5F001644535.1_202016- 05-18] 69 sequences; 38,501,010 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq29 462 9e-128 seq2 127 9e-27 >seq29 Length=430389 Score = 462 bits (512), Expect = 9e-128 Identities = 355/418 (85%), Gaps = 2/418 (0%) Strand=Plus/Plus Query 243 CCGGTGCACTCTTCTGCGGTCAGGCCAGCATCAGCTCGGGCGGTCGGATAAAGGCCCCGG 302 || |||| ||||||| | |||||||||||||| | ||| ||| ||||||||| | | Sbjct 230492 CCTGTGCGCTCTTCTATAGGCAGGCCAGCATCAGTTTGGGTGGTTGGATAAAGGTCTATG 230551 Query 303 GAATGTGGCCCCCTTCGGGG-GGTGTTATAGCCCGGGGTGGAATGCGGCCCGCCTGGACT 361 | || | || |||||| || ||||| | | | |||| || ||||||||| Sbjct 230552 TCACGTATCTCCTCTCGGGGAGGCCGTATAGGGCAGAC-GACATGCAACCAGCCTGGACT 230610 Query 362 GAGGTCCGCGCTCCGGCTAGGATGCTGGCGTAATGGTTGTAAGCGGCCCGTCTTGGAACA 421 ||||||||||| | ||||||||||||||||||||| |||||||||||||||||| ||| Sbjct 230611 GAGGTCCGCGCATCTGCTAGGATGCTGGCGTAATGGCTGTAAGCGGCCCGTCTTGAAACG 230670 Query 422 CGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTGTCAAACCCGTGCGCGTAATGA 481 |||||||| ||||||||||| |||||||||||||||||||||| |||| ||||| ||| | Sbjct 230671 CGGACCAACGAGTCTAACATGTATGCGAGTGTTTGGGTGTCAAGCCCGAGCGCGCAATAA 230730 Query 482 AAGTGAACGGAGGTGGGAACCCGTGAGGGTGCACCATCGACCGATCCTGATGTCTTCGGA 541 |||||||||||||||||| ||| || |||||||||||||||||||||||| ||||| || Sbjct 230731 AAGTGAACGGAGGTGGGATCCCTTGCGGGTGCACCATCGACCGATCCTGAGGTCTTTGGG 230790 Query 542 TGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAG 601 ||||||||||||||||||| |||||||||||||| |||||||||| |||||| || ||| Sbjct 230791 TGGATTTGAGTAAGAGCATGGCTGTTGGGACCCGGAAGATGGTGAGCTATGCTAGACTAG 230850 Query 602 GGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGAT 659 |||||||||||||||||||||||||||||||||||||||||| | ||||||||||||| Sbjct 230851 GGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCCGACGTGCAAATCGAT 230908 Score = 105 bits (116), Expect = 3e-20 Identities = 79/93 (85%), Gaps = 0/93 (0%) Strand=Plus/Minus Query 24 GTGAAGCTCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATT 83 || ||||||||| |||||||||| | |||||||||| | || |||||||||| ||||| Sbjct 341537 GTAAAGCTCCTTGGACGAGTCGAAGTTTTTGGGAATGAAACTAGAAATGGGAGGGAAATT 341478 Query 84 TCTTCTAAAGCTAAATATTGGCCAGAGACCGAT 116 ||||| ||||||||||| |||||| |||| ||| Sbjct 341477 TCTTCGAAAGCTAAATACTGGCCAAAGACGGAT 341445 >seq2 Length=2710459 Score = 127 bits (140), Expect = 9e-27 Identities = 84/93 (90%), Gaps = 0/93 (0%) Strand=Plus/Minus Query 455 TGGGTGTCAAACCCGTGCGCGTAATGAAAGTGAACGGAGGTGGGAACCCGTGAGGGTGCA 514 |||||||||| ||| ||||| ||||||||||||||||||||||| || | |||||||| Sbjct 2513136 TGGGTGTCAAGCCCAAGCGCGCAATGAAAGTGAACGGAGGTGGGATCCTTTAAGGGTGCA 2513077 Query 515 CCATCGACCGATCCTGATGTCTTCGGATGGATT 547 ||||||||||||||||| ||||||||||||||| Sbjct 2513076 CCATCGACCGATCCTGAAGTCTTCGGATGGATT 2513044 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079998519950