Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pyrenochaeta_20sp._20UM_20256_20[genbank_20GCA_5F000359685.1_202013- 04-10] 254 sequences; 35,484,281 total letters Query= AAMG01001634.1 Length=217 Score E Sequences producing significant alignments: (Bits) Value seq139 170 2e-40 seq132 134 2e-29 seq150 125 9e-27 seq144 104 3e-20 seq159 95.1 1e-17 seq191 91.5 2e-16 >seq139 Length=9664 Score = 170 bits (188), Expect = 2e-40 Identities = 171/214 (80%), Gaps = 6/214 (3%) Strand=Plus/Minus Query 6 CTAGAAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCG 65 ||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||| Sbjct 8659 CTAGAAACCAACAAAATAGAACCGCACGTCCTATTCTATTATTCCATGCTAACGTATTCG 8600 Query 66 GGCGTAAGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGTCCTGGTTCCTCCGCA 125 || | |||||||||||||||||||||||| |||| ||||||||||||| ||| | || Sbjct 8599 AGCAAAGGCCTGCTTTGAACACTCTAATTTTTTCAAAGTAAAAGTCCTGG-TCCCCAACA 8541 Query 126 C-ACCAATGAA-GGCATACGGGCTCACCAAGAGGTAGGGCTGGGTAATGCAGTACTCGCC 183 | ||| |||| ||||| || || ||| ||| ||| | || ||||| ||| Sbjct 8540 CGCCCAGTGAAGGGCAT-GAGGTTCTCCAGAAGGAAGGCCCGGCCGGACAAGTACACGCG 8482 Query 184 GTGAGGCGGACCATAGCACCCA-GCCCGAGTTTC 216 |||||||||||| | || ||| |||| |||||| Sbjct 8481 GTGAGGCGGACC-TGCCAGCCAGGCCCAAGTTTC 8449 >seq132 Length=15117 Score = 134 bits (148), Expect = 2e-29 Identities = 148/192 (77%), Gaps = 4/192 (2%) Strand=Plus/Minus Query 6 CTAGAAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCG 65 ||||||||||||||||||| |||||||||||||||||||||| ||||||| |||||| Sbjct 1780 CTAGAAACCAACAAAATAGAACCGCACGTCCTATTCTATTATTCTATGCTAACGTATTCA 1721 Query 66 GGCGTAAGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGTCCTGGTTCCTCCGCA 125 | | ||||||||| |||||||||||||| | || ||||||||||| | ||| | || Sbjct 1720 AGTAAAGGCCTGCTTTAAACACTCTAATTTTTTTAAAGTAAAAGTCCTAG-TCCCCAACA 1662 Query 126 CACC-AATGAA-GGCATACGGGCTCACCAAGAGGTAGGGCTGGGTAATGCAGTACTCGCC 183 | || | |||| ||||| || || | | ||| ||| || | ||||| ||| Sbjct 1661 CGCCTAGTGAAGGGCAT-GAGGTTCTCTAGAAGGAAGGCCTAGCCGGACAAGTACACGCG 1603 Query 184 GTGAGGCGGACC 195 |||||||||||| Sbjct 1602 GTGAGGCGGACC 1591 Score = 116 bits (128), Expect = 4e-24 Identities = 144/192 (75%), Gaps = 4/192 (2%) Strand=Plus/Minus Query 6 CTAGAAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCG 65 |||||||| || ||||||| | ||| |||||||||||||||| || |||| ||||| Sbjct 10085 CTAGAAACTAATAAAATAGAACCACACATCCTATTCTATTATTCTATACTAACGTATTTA 10026 Query 66 GGCGTAAGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGTCCTGGTTCCTCCGCA 125 || | |||| |||| || ||||||||||| |||| ||||||||||| || ||| || Sbjct 10025 AGCAAAGGCCTACTTTAAATACTCTAATTTTTTCAAAGTAAAAGTCCTAGTCCCT-AACA 9967 Query 126 CACC-AATGAA-GGCATACGGGCTCACCAAGAGGTAGGGCTGGGTAATGCAGTACTCGCC 183 |||| | |||| |||||| || || | | ||| ||| | || ||||| ||| Sbjct 9966 CACCTAGTGAAGGGCATA-AGGTTCTCTAGAAGGAAGGCCCGGCCGGACAAGTACACGCG 9908 Query 184 GTGAGGCGGACC 195 |||||||||||| Sbjct 9907 GTGAGGCGGACC 9896 >seq150 Length=5836 Score = 125 bits (138), Expect = 9e-27 Identities = 146/192 (76%), Gaps = 4/192 (2%) Strand=Plus/Plus Query 6 CTAGAAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCG 65 |||||||| |||||||||| |||||||||||||||||||||| ||||||| ||||| Sbjct 4057 CTAGAAACTAACAAAATAGAACCGCACGTCCTATTCTATTATTCTATGCTAACGTATTTA 4116 Query 66 GGCGTAAGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGTCCTGGTTCCTCCGCA 125 | | |||| |||| |||||||||||||| | || ||||||||||| | ||| | || Sbjct 4117 AGTAAAGGCCTACTTTAAACACTCTAATTTTTTTAAAGTAAAAGTCCTAG-TCCCCAACA 4175 Query 126 CACC-AATGAA-GGCATACGGGCTCACCAAGAGGTAGGGCTGGGTAATGCAGTACTCGCC 183 |||| | |||| |||||| || || | | ||| ||| | || ||||| ||| Sbjct 4176 CACCTAGTGAAGGGCATA-AGGTTCTCTAGAAGGAAGGCCCGGCCGGACAAGTACACGCA 4234 Query 184 GTGAGGCGGACC 195 || ||||||||| Sbjct 4235 GTAAGGCGGACC 4246 >seq144 Length=7156 Score = 104 bits (114), Expect = 3e-20 Identities = 144/196 (73%), Gaps = 12/196 (6%) Strand=Plus/Minus Query 6 CTAGAAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCG 65 |||||||| || ||||||| || | ||||||||||||||||| || |||| ||||| Sbjct 1783 CTAGAAACTAATAAAATAGAACCGTATGTCCTATTCTATTATTCTATACTAACGTATTTA 1724 Query 66 GGCGTAAGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGTCCTGGTTCCTCCGCA 125 | | |||| |||| |||||||||||||| | || ||||||||||| || ||| | Sbjct 1723 AGTAAAGGCCTACTTTAAACACTCTAATTTTTTTAAAGTAAAAGTCCTAGTCCCT-AATA 1665 Query 126 CACC-AATGAA-GGCATACGGGCTCACCAAGAGGTAGG----GCTGGGTAATGCAGTACT 179 | || | |||| || ||| || || | | ||| ||| ||||| || ||||| Sbjct 1664 CGCCTAGTGAAGGGTATA-AGGTTCTCTAGAAGGAAGGCCTAGCTGGATA----AGTACA 1610 Query 180 CGCCGTGAGGCGGACC 195 ||| |||||||||||| Sbjct 1609 CGCGGTGAGGCGGACC 1594 >seq159 Length=3617 Score = 95.1 bits (104), Expect = 1e-17 Identities = 90/115 (78%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 6 CTAGAAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCG 65 |||||||| || ||||||| ||||||||||||||||||| || ||||| |||| Sbjct 1357 CTAGAAACTAATAAAATAGAACTATACGTCCTATTCTATTATTCTATACTAATATATTTA 1298 Query 66 GGCGTAAGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGTCCTGGTTCCT 120 | | |||| |||| |||||||||||||| | || |||||||| || |||||| Sbjct 1297 AGTAAAGGCCTACTTTAAACACTCTAATTTTTTTAAAGTAAAAGTTCTAGTTCCT 1243 >seq191 Length=1964 Score = 91.5 bits (100), Expect = 2e-16 Identities = 89/115 (77%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 6 CTAGAAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCG 65 |||||||| || ||||||| ||||||||||||||||||| || |||| ||||| Sbjct 1827 CTAGAAACTAATAAAATAGAACTATACGTCCTATTCTATTATTCTATACTAACGTATTTA 1768 Query 66 GGCGTAAGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGTCCTGGTTCCT 120 | | |||| |||| || ||||||||||| | || ||||||||||| || ||| Sbjct 1767 AGTAAAGGCCTACTTTAAATACTCTAATTTTTTTAAAGTAAAAGTCCTAGTCCCT 1713 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595198535436