Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pyrenochaeta_20sp._20UM_20256_20[genbank_20GCA_5F000359685.1_202013- 04-10] 254 sequences; 35,484,281 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq139 531 1e-148 seq132 423 4e-116 seq150 354 2e-95 seq144 333 5e-89 seq159 251 1e-64 >seq139 Length=9664 Score = 531 bits (588), Expect = 1e-148 Identities = 303/309 (98%), Gaps = 0/309 (0%) Strand=Plus/Plus Query 20 GAGCGAGACCTTAACCTGCTAAATAGCCAGGCCCGCTTTGGCGGGTCGCCGGCTTCTTAG 79 || ||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| Sbjct 101 GAACGAGACCTTAACCTGCTAAATAGCCAGGCTAGCTTTGGCTGGTCGCCGGCTTCTTAG 160 Query 80 AGGGACTATCGGCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTA 139 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 161 AGGGACTATCGGCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTA 220 Query 140 GATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACCTTGGCCG 199 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 221 GATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCTTCACCTTGGCCG 280 Query 200 GAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTATTG 259 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 281 GAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTATTG 340 Query 260 CTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCCTG 319 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 341 CTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCATGCGTTGATTACGTCCCTG 400 Query 320 CCCTTTGTA 328 ||||||||| Sbjct 401 CCCTTTGTA 409 Score = 531 bits (588), Expect = 1e-148 Identities = 303/309 (98%), Gaps = 0/309 (0%) Strand=Plus/Plus Query 20 GAGCGAGACCTTAACCTGCTAAATAGCCAGGCCCGCTTTGGCGGGTCGCCGGCTTCTTAG 79 || ||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| Sbjct 1400 GAACGAGACCTTAACCTGCTAAATAGCCAGGCTAGCTTTGGCTGGTCGCCGGCTTCTTAG 1459 Query 80 AGGGACTATCGGCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTA 139 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1460 AGGGACTATCGGCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTA 1519 Query 140 GATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACCTTGGCCG 199 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 1520 GATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCTTCACCTTGGCCG 1579 Query 200 GAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTATTG 259 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1580 GAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTATTG 1639 Query 260 CTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCCTG 319 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 1640 CTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCATGCGTTGATTACGTCCCTG 1699 Query 320 CCCTTTGTA 328 ||||||||| Sbjct 1700 CCCTTTGTA 1708 >seq132 Length=15117 Score = 423 bits (468), Expect = 4e-116 Identities = 279/309 (90%), Gaps = 0/309 (0%) Strand=Plus/Plus Query 20 GAGCGAGACCTTAACCTGCTAAATAGCCAGGCCCGCTTTGGCGGGTCGCCGGCTTCTTAG 79 || |||||||||||||||||||||||| |||| ||||| || ||||| |||||||||| Sbjct 2261 GAACGAGACCTTAACCTGCTAAATAGCTAGGCTAGCTTTAGCTAGTCGCTGGCTTCTTAG 2320 Query 80 AGGGACTATCGGCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTA 139 |||||||||||||| |||| |||||||||||||| ||||| |||||||||||||||||| Sbjct 2321 AGGGACTATCGGCTTAAGCTAATGGAAGTTTGAGGTAATAATAGGTCTGTGATGCCCTTA 2380 Query 140 GATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACCTTGGCCG 199 ||||||||||||||||||||||||||||| ||||||| ||||||||| | ||||| || Sbjct 2381 GATGTTCTGGGCCGCACGCGCGCTACACTAACAGAGCTAACGAGTTCTTTACCTTAGCTA 2440 Query 200 GAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTATTG 259 |||||||| ||||||||| ||||||||| ||||||| ||||||||||||| ||||||| Sbjct 2441 GAAGGTCTAGGTAATCTTATTAAACTCTATCGTGCTAGGGATAGAGCATTATAATTATTA 2500 Query 260 CTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCCTG 319 ||||| |||||||||||||||||||||||||||||| |||| |||||||||||||||||| Sbjct 2501 CTCTTTAACGAGGAATGCCTAGTAAGCGCGTGTCATTAGCATGCGTTGATTACGTCCCTG 2560 Query 320 CCCTTTGTA 328 ||||||||| Sbjct 2561 CCCTTTGTA 2569 Score = 378 bits (418), Expect = 1e-102 Identities = 269/309 (87%), Gaps = 0/309 (0%) Strand=Plus/Plus Query 20 GAGCGAGACCTTAACCTGCTAAATAGCCAGGCCCGCTTTGGCGGGTCGCCGGCTTCTTAG 79 || |||||||||||||| ||||||||| |||| ||||| || ||||| |||||||||| Sbjct 10566 GAACGAGACCTTAACCTACTAAATAGCTAGGCTAGCTTTAGCTAGTCGCTGGCTTCTTAG 10625 Query 80 AGGGACTATCGGCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTA 139 ||||||||| ||| |||| || ||||||||||| |||||||||||||| || |||||| Sbjct 10626 AGGGACTATTAGCTTAAGCTAATAGAAGTTTGAGGTAATAACAGGTCTGTAATACCCTTA 10685 Query 140 GATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACCTTGGCCG 199 ||| ||||||||||||||||||||| ||| ||||||| ||||||||| | ||||| || Sbjct 10686 GATATTCTGGGCCGCACGCGCGCTATACTAACAGAGCTAACGAGTTCTTTACCTTAGCTA 10745 Query 200 GAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTATTG 259 |||||||| ||||||||| ||||||||| ||||||| ||||||||||||| |||||||| Sbjct 10746 GAAGGTCTAGGTAATCTTATTAAACTCTATCGTGCTAGGGATAGAGCATTACAATTATTA 10805 Query 260 CTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCCTG 319 |||||||||||||||| |||||||||||||| | ||||||| ||||| ||||||||||| Sbjct 10806 CTCTTCAACGAGGAATACCTAGTAAGCGCGTATTATCAGCATGCGTTAATTACGTCCCTA 10865 Query 320 CCCTTTGTA 328 |||||| || Sbjct 10866 CCCTTTATA 10874 >seq150 Length=5836 Score = 354 bits (392), Expect = 2e-95 Identities = 264/309 (85%), Gaps = 0/309 (0%) Strand=Plus/Minus Query 20 GAGCGAGACCTTAACCTGCTAAATAGCCAGGCCCGCTTTGGCGGGTCGCCGGCTTCTTAG 79 || |||||||||||||||||||||||| |||| ||||| || ||||| ||||||||| Sbjct 3576 GAACGAGACCTTAACCTGCTAAATAGCTAGGCTAGCTTTAGCTAGTCGCTAGCTTCTTAG 3517 Query 80 AGGGACTATCGGCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTA 139 ||||||||| ||| |||| || ||||||| ||| ||||| |||||| | ||||||||| Sbjct 3516 AGGGACTATTAGCTTAAGCTAATAGAAGTTTAAGGTAATAATAGGTCTATAATGCCCTTA 3457 Query 140 GATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACCTTGGCCG 199 |||||||| ||||||||| |||||| ||| ||||||||||||||||| | ||||| || Sbjct 3456 GATGTTCTAGGCCGCACGTGCGCTATACTAACAGAGCCAACGAGTTCTTTACCTTAGCTA 3397 Query 200 GAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTATTG 259 |||||||| ||||||||| ||||||||| | ||||| ||||||||| |||||||||||| Sbjct 3396 GAAGGTCTAGGTAATCTTATTAAACTCTATTGTGCTAGGGATAGAGTATTGCAATTATTA 3337 Query 260 CTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCCTG 319 ||||| || |||||| |||||||||||||||| || |||| ||||| ||||||||||| Sbjct 3336 CTCTTTAATAAGGAATACCTAGTAAGCGCGTGTTATTAGCATGCGTTAATTACGTCCCTA 3277 Query 320 CCCTTTGTA 328 ||||||||| Sbjct 3276 CCCTTTGTA 3268 >seq144 Length=7156 Score = 333 bits (368), Expect = 5e-89 Identities = 256/304 (84%), Gaps = 0/304 (0%) Strand=Plus/Plus Query 25 AGACCTTAACCTGCTAAATAGCCAGGCCCGCTTTGGCGGGTCGCCGGCTTCTTAGAGGGA 84 |||||||||||| ||||||||| |||| ||||| || ||||||||||||||||||||| Sbjct 2269 AGACCTTAACCTACTAAATAGCTAGGCTAGCTTTAGCTAGTCGCCGGCTTCTTAGAGGGA 2328 Query 85 CTATCGGCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGT 144 ||||| ||| |||||||| ||||||| ||||||||| |||||| | || ||||||||| | Sbjct 2329 CTATCAGCTTAAGCCGATAGAAGTTTAAGGCAATAATAGGTCTATAATACCCTTAGATAT 2388 Query 145 TCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACCTTGGCCGGAAGG 204 ||| |||||||||||||||||||| | ||||| || ||||| | ||||| || ||||| Sbjct 2389 TCTAGGCCGCACGCGCGCTACACTAATAGAGCTAATAAGTTCTTTACCTTAGCTAGAAGG 2448 Query 205 TCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTT 264 ||| ||||||||| ||||||||| ||||||| ||||||||| ||| |||||||| ||||| Sbjct 2449 TCTAGGTAATCTTATTAAACTCTATCGTGCTAGGGATAGAGTATTACAATTATTACTCTT 2508 Query 265 CAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTT 324 || |||||| |||||||||||||||| || || | || ||||||||||| ||||| Sbjct 2509 TAATAAGGAATACCTAGTAAGCGCGTGTTATTAGTATATATTAATTACGTCCCTACCCTT 2568 Query 325 TGTA 328 | || Sbjct 2569 TATA 2572 >seq159 Length=3617 Score = 251 bits (278), Expect = 1e-64 Identities = 238/304 (78%), Gaps = 0/304 (0%) Strand=Plus/Plus Query 25 AGACCTTAACCTGCTAAATAGCCAGGCCCGCTTTGGCGGGTCGCCGGCTTCTTAGAGGGA 84 |||||||||||| ||||||||| |||| ||||| || ||||| |||||||||||||| Sbjct 1843 AGACCTTAACCTACTAAATAGCTAGGCTAGCTTTAGCTAGTCGCTAGCTTCTTAGAGGGA 1902 Query 85 CTATCGGCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGT 144 |||| ||| |||| || ||||||| ||| ||||| |||||| | || ||||||||| | Sbjct 1903 CTATTAGCTTAAGCTAATAGAAGTTTAAGGTAATAATAGGTCTATAATACCCTTAGATAT 1962 Query 145 TCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACCTTGGCCGGAAGG 204 ||| ||||| ||||| ||| ||| | ||||| || ||||| | ||||| || ||||| Sbjct 1963 TCTAGGCCGTACGCGTACTATACTAATAGAGCTAATAAGTTCTTTACCTTAGCTAGAAGG 2022 Query 205 TCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTT 264 ||| ||||||||| ||||||||| | | || || |||||| ||| ||||||| ||||| Sbjct 2023 TCTAGGTAATCTTATTAAACTCTATTATACTAGGAATAGAGTATTATAATTATTACTCTT 2082 Query 265 CAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTT 324 || |||||| ||||||||||| | | || || | || ||||||||||| ||||| Sbjct 2083 TAATAAGGAATACCTAGTAAGCGTATATTATTAGTATATATTAATTACGTCCCTACCCTT 2142 Query 325 TGTA 328 | || Sbjct 2143 TATA 2146 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 947197594112