Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pyrenochaeta_20sp._20UM_20256_20[genbank_20GCA_5F000359685.1_202013- 04-10] 254 sequences; 35,484,281 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq93 333 2e-86 seq13 167 2e-36 >seq93 Length=73557 Score = 333 bits (368), Expect = 2e-86 Identities = 769/1152 (67%), Gaps = 24/1152 (2%) Strand=Plus/Minus Query 65813 TCGGCCAGACCTTGAACTCCAATACCGATGGGACGATGACGCAAATTGGAACGTCTCGCC 65872 ||||| |||||||| || || || || || || || ||||| || ||| ||| | ||| Sbjct 32800 TCGGCGAGACCTTGCACACCCATGCCAATAGGGCGGTGACGGAAGTTGCTACGACGTGCC 32741 Query 65873 TCAGGTACAGGGTAGTAATTGATATCGATAATGCGATTCAAATTGCGTGTCACCACATGC 65932 || || ||||||| ||||| |||||||| ||||| ||| || ||||| || || Sbjct 32740 TCTTCGACGGGGTAGTGATTGACTTCGATAATCTTATTCAGATTACGCGTCACGACCTGA 32681 Query 65933 ACGA-TACGTCGCAATTGTTCGAAATCAAAATGTTTAGGACGATCGGGAGTGCCGGACAC 65991 || | ||| ||| | | ||| || || | | || | | ||| | Sbjct 32680 GTGACTTCGT-GCAGCTTCTGGAAGTCGAACTCGCCA---CGCTTGT-AGT--------C 32634 Query 65992 CACAAACTTGGGAAGGGCAAGAGATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGGT 66051 || ||| || || |||||||| || | |||||| ||||| | ||| ||||| ||||| Sbjct 32633 GACGAACGATGGGAGAGCAAGAGAAGCCAAGTTGCAAACAGCGACCTCATCAGGCGCGGT 32574 Query 66052 ATACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGATT 66111 ||||||| || || |||||||| || || ||| ||||| || | ||||| || || Sbjct 32573 GTACTCGATGATCTCAGTGCACAGGTTGGAGCTGCGGATGGTACCGAGATTCTTCTGGTT 32514 Query 66112 ACTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTGGGA 66171 |||||||| ||||| ||||||||||| | |||| | || | || ||||| || | Sbjct 32513 GCTCTTGCGGTTGCAGGCATCCTTGTAAAGCATGAAAGGGTTACCAGTCTCCGTCTGAGC 32454 Query 66172 CTCAATGATGGCGTGCCAAAGAGCGCGTGCCTTCACCGTA---CGT--ACCGCCCTACCT 66226 ||| | |||||| | |||||| | || ||| || || || ||||| ||| Sbjct 32453 CTCGAGGATGGCATACCAAAGCTTCTGGGCACGCACTGTCTCGCGGCCACGGCCCT-CCT 32395 Query 66227 TTGCGTTCGTAATGTTCGTAGAGGTGTTCGAAGGATTCACCCCATACTTCGGACAGACAT 66286 | || || | | ||||| | ||||| ||||| | || || | || | Sbjct 32394 TC----TCATAGCGGTGATAGAGCTCCTCGAACTCATCACCGTAGACGTCCGCGAGGCCG 32339 Query 66287 GGACACTTGTGTGGACACATCAGCGACCAATCACCATCCTGTTCTACACGACGCATAAAT 66346 ||| || || || |||||||||| ||| || || | | | ||||| ||| || Sbjct 32338 GGAGCCTCGTTGGGGCACATCAGCGTCCACTCGCCGTTTTCCTGCACACGCTTCATGAAG 32279 Query 66347 AGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAATGCCGTGA 66406 ||||| || ||||| || ||||||||||| ||||| || || ||| || ||||||| Sbjct 32278 AGATCGGGGATCCACAGAGCGTAGAAGAGGTCGCGGGCACGAACCTCTTCCTTGCCGTGG 32219 Query 66407 TTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTAGATGGCG 66466 || || || | ||| | ||| |||| | || || ||||| || || |||||||||||| Sbjct 32218 TTCTTACGAAGGTCCAAGAAGCCAAATACATCAGCGTGCCACGGCTCGAGGTAGATGGCG 32159 Query 66467 AACGAGCCCATACGTTTGCCGCCACCTTGGTCGACGTAGCGAGCGACATTGTTGAAGACA 66526 || | || ||| ||| |||||| ||||||||||||||||| |||||| ||||| Sbjct 32158 AAAGCACCTGGACGCTTGTTGCCACCCTGGTCGACGTAGCGAGCAGTGTTGTTGTAGACA 32099 Query 66527 CGCAACATCGGTACGAGCCCGTTAGATTTGCCATTGGTGCCGTCGATGGGGGATCCTCGT 66586 || | ||| || | ||| || || ||| | || || ||||| | ||| ||| || Sbjct 32098 CGGAGCATGGGAATGAGACCATTCGATGTACCGTTTGTGCCACCAATGTAGGAGCCGGTG 32039 Query 66587 GCCCGTATATCGTGAACATTCAGACCAATACCACCGGCCGTCTTCGAGATGGCAGCACAA 66646 || || || ||| || || ||||||||||| || || ||||| ||||| |||||| Sbjct 32038 GCACGAATGCGGTGCACGTTGAGACCAATACCGCCAGCGGTCTTGGAGATCAAAGCACAT 31979 Query 66647 TCGGCCACTGTCCGGAATATGCCGTCAATGGAGTCACCCTTGATGGTCAGGAGGTAGCAT 66706 | ||| | | || || |||||| ||| |||| ||| | |||| |||| Sbjct 31978 GTCTTAAGTGTATCGTAGATTCCATCAATGCTGTCTTCCTTCATGTCGATGAGGAAGCAG 31919 Query 66707 GAACTAAGTTGGGGTTTGGGTGTGGCGGCCGAGAAGAGGGTGGGTGTAGCGTGCGTAAAG 66766 || | || || || || | || ||| || || || | |||||| || ||| Sbjct 31918 GACGACATCTGAGGCGATGGGGTACCCGCGTTGAAAAGTGTAGGGGAAGCGTGTGTGAAG 31859 Query 66767 TAATGGCGAGACATGTAATTGTACGTCTCGATGACAGCATCAATGTTTTCGCCATGAATC 66826 || | | |||||||| | ||| ||||||||| | || || | ||||| || || Sbjct 31858 TACTTCTGCGACATGTAGTCGTATGTCTCGATGGCCTTCTCGATATCCTCGCCGTGGATG 31799 Query 66827 CCGAGTGCACATCGCATCAGGAGGTATTGAGGCCGTTCGACCAGCCGATCCTTGATATGC 66886 |||| || |||||||| | || ||| || |||||| | | | | ||||| | Sbjct 31798 CCGACAGCCACGCGCATCAGCATGTGTTGTGGGCGTTCGGCAACCTTGCCGTTGATGCGG 31739 Query 66887 ATTAAGTAGGAGCGTTCCAGGGTCTTGATACCAAAGTACGAGTAATTGAAATCGTTAGCA 66946 | | ||| ||||| || || ||||||| || ||| | ||| ||||||||| || Sbjct 31738 AGGAGGTATGAGCGCTCGAGCGTCTTGAAGCCGAAGAATTGGTAGTTGAAATCGCGGTCA 31679 Query 66947 TGCACGATGGCC 66958 | || |||||| Sbjct 31678 TAGACAATGGCC 31667 >seq13 Length=704243 Score = 167 bits (184), Expect = 2e-36 Identities = 292/425 (69%), Gaps = 9/425 (2%) Strand=Plus/Plus Query 61510 GTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGA 61569 ||||||||| | || |||||||| || || ||| | ||||| ||| ||||||| || || Sbjct 439866 GTCGAGGGTATCTTCTTCAGTGGTTCCTTCGCCTCCATCTTCTGGCTGAAGAAGCGCGGT 439925 Query 61570 CTTATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGGGCATGCATTGT 61629 || |||||||| || |||||| ||| ||| | || || || |||||||||||||| Sbjct 439926 CTCATGCCCGGCCTCACCTTCTCCAACGAGCTCATTTCGCGTGACGAGGGCATGCACACC 439985 Query 61630 GATTTTGCTGTTTTGCTATTCAAACGCTATCTGGTGAA---TCGTCCGTCGGAGGAGCGT 61686 ||||| || | || || | ||| |||| |||||| ||||| Sbjct 439986 GATTTCGCCTGCCTCCTCTTT------TCTCTCCTGAACACTCGTCCCAGCAAGGAGTCG 440039 Query 61687 GTGGGTGAGATTGTTCGTGAGGCGGTAACTATCGAACAGGAATTTCTGACTGACGCTTTG 61746 || | || | ||| || || || ||||| |||||||| |||||||| ||| || Sbjct 440040 GTCCAGGCCATCATCACTGAAGCTGTCACAATCGAGCAGGAATTCCTGACTGAGGCTCTG 440099 Query 61747 CCCGTCTCACTCATCGGCATGAATTGTGGACTAATGTCGCAGTATATTGAATTTGTTGCC 61806 || | | || |||||||||| | || |||| || || ||||| || |||||| Sbjct 440100 CCTTGCGCTCTGCTCGGCATGAACGCTACCCTCATGTGCCAATACATTGAGTTCGTTGCC 440159 Query 61807 GACCGTCTGTTGGTCGATTTGGGTATGAAGCGGATCTATAATACGAAAAACCCATTTGAT 61866 ||||||||| | | | | | |||| | | | || ||| | | ||||| || || Sbjct 440160 GACCGTCTGCTCTTGGCTCTCGGTAACACCAAGGTGTACAATGCCACCAACCCCTTCGAC 440219 Query 61867 TTCATGGACATGATTTCGCTGGATGGCAAGACGAATTTTTTCGAGAAACGTGTAGGCGAC 61926 |||||||| | || || ||| ||||||||| || || |||||||| || || |||||| Sbjct 440220 TTCATGGAGAATATCTCCTTGGCTGGCAAGACCAACTTCTTCGAGAAGCGCGTTGGCGAC 440279 Query 61927 TATCA 61931 || || Sbjct 440280 TACCA 440284 Score = 122 bits (134), Expect = 7e-23 Identities = 205/295 (69%), Gaps = 9/295 (3%) Strand=Plus/Plus Query 61090 TGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCC 61149 |||| |||||||| ||||| ||||| ||||||||||| | || ||| | ||| | ||| Sbjct 439394 TGGCAAATGTACAAGAAGGCCGAAGCATCCTTCTGGACAGCCGAAGAGATTGATCTCTCC 439453 Query 61150 AAAGACATGAATGACTGGGA---GCGTTTATCGAGCGGTGAACAACATTTCATTAAA--- 61203 || || | | |||||| | ||| || || || || | | ||| ||| Sbjct 439454 AAGGATCTCCACGACTGGAACAAGCGATT---GAACGACGACGAGCGCTTCTTTATCTCC 439510 Query 61204 CATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACGT 61263 || || | || || || ||||| || || || |||||||| ||||| || | || || Sbjct 439511 CACGTCCTAGCCTTTTTCGCCGCCTCAGATGGCATCGTCAACGAGAACCTAGTCGAGCGC 439570 Query 61264 TTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATG 61323 ||| | || || ||| | | |||||| | || ||||||||||||||||| ||| Sbjct 439571 TTCTCCGGCGAAGTACAAATACCCGAGGCGAGGTGCTTCTACGGCTTCCAGATCATGATG 439630 Query 61324 GAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGC 61378 ||||| ||||||| |||| ||| | | || ||||| || |||||||| |||| Sbjct 439631 GAGAACATCCACTCAGAGACATACTCTCTGCTGATCGACACCTACATCAGTGAGC 439685 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397566769278560