Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rachicladosporium_20antarcticum_20[genbank_20GCA_5F002077065.1_20201 7-04-03] 267 sequences; 47,410,550 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq90 120 6e-25 seq233 107 4e-21 >seq90 Length=940264 Score = 120 bits (132), Expect = 6e-25 Identities = 89/104 (86%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 224 CTCTGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTA 283 |||| | || ||||||||||||||||||| |||||||||| | ||||| ||| |||| Sbjct 467880 CTCTATTGTACTGGGGATAGAGCATTGCAGTTATTGCTCTCAATCGAGGGGCGCCCAGTA 467939 Query 284 AGCGCGTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGT 327 ||||| || |||||||| |||||||||||||||||||||| ||| Sbjct 467940 AGCGCATGGCATCAGCATGCGTTGATTACGTCCCTGCCCTGTGT 467983 >seq233 Length=126900 Score = 107 bits (118), Expect = 4e-21 Identities = 89/109 (82%), Gaps = 6/109 (6%) Strand=Plus/Plus Query 220 TAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCT 279 || |||||||||| ||||||| || |||||||||||| | |||||||| | ||| Sbjct 73586 TACACTCTGTCGTACTGGGGACAGGGCATTGCAATTAAT------CAACGAGGGACGCCC 73639 Query 280 AGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 ||| || || || ||||||| ||||||||||||||||||||||||||| Sbjct 73640 AGTGAGTGCAAGTTATCAGCATGCGTTGATTACGTCCCTGCCCTTTGTA 73688 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 947197470976