Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rachicladosporium_20antarcticum_20[genbank_20GCA_5F002077065.1_20201
7-04-03] 267 sequences; 47,410,550 total letters
Query= AAMG01002199.1
Length=543
Score E
Sequences producing significant alignments: (Bits) Value
seq173 693 0.0
seq153 693 0.0
seq227 181 3e-43
seq13 132 2e-28
>seq173
Length=618
Score = 693 bits (768), Expect = 0.0
Identities = 415/435 (95%), Gaps = 3/435 (1%)
Strand=Plus/Plus
Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66
|||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 187 CTTTTGCTCTACTGGAGATTTCTGTTCTCCATGAGCTCCCCTTAGGACACCTGCGTTATG 246
Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 247 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 306
Query 127 GGCCCGCGAAGGACCTTAACGCCAGAAAATGGTCGGTGAAGACCAGTTCCGCTTCATTGA 186
||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 307 GGCCCGCGAGGGACCTTAACGCCAGAATATGGTCGGTGAAGACCAGTTCCGCTTCATTGA 366
Query 187 TTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGGCTCCCACTTA 246
|||||||||||||||||||||||||||||||||||| |||||||| |||||||| ||
Sbjct 367 TTAAGTAAAAAAACGATAAGGGTAGTGGTATTTCACCGGCGCCGAA---GCTCCCACCTA 423
Query 247 TTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTC 306
||||||||| | | ||| |||||||| ||| |||||||||||||||||||||||||||
Sbjct 424 TTCTACACCCCCTATGTCTTTTCACAATGTCAAACTAGAGTCAAGCTCAACAGGGTCTTC 483
Query 307 TTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATA 366
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 484 TTTCCCCGCTGATTCTGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATA 543
Query 367 GGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATT 426
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 544 GGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATT 603
Query 427 TGGCTACCTTAAGAG 441
|||||||||||||||
Sbjct 604 TGGCTACCTTAAGAG 618
>seq153
Length=1413
Score = 693 bits (768), Expect = 0.0
Identities = 415/435 (95%), Gaps = 3/435 (1%)
Strand=Plus/Plus
Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66
|||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 35 CTTTTGCTCTACTGGAGATTTCTGTTCTCCATGAGCTCCCCTTAGGACACCTGCGTTATG 94
Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 95 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 154
Query 127 GGCCCGCGAAGGACCTTAACGCCAGAAAATGGTCGGTGAAGACCAGTTCCGCTTCATTGA 186
||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 155 GGCCCGCGAGGGACCTTAACGCCAGAATATGGTCGGTGAAGACCAGTTCCGCTTCATTGA 214
Query 187 TTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGGCTCCCACTTA 246
|||||||||||||||||||||||||||||||||||| |||||||| |||||||| ||
Sbjct 215 TTAAGTAAAAAAACGATAAGGGTAGTGGTATTTCACCGGCGCCGAA---GCTCCCACCTA 271
Query 247 TTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTC 306
||||||||| | | ||| |||||||| ||| |||||||||||||||||||||||||||
Sbjct 272 TTCTACACCCCCTATGTCTTTTCACAATGTCAAACTAGAGTCAAGCTCAACAGGGTCTTC 331
Query 307 TTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATA 366
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 332 TTTCCCCGCTGATTCTGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATA 391
Query 367 GGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATT 426
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 392 GGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATT 451
Query 427 TGGCTACCTTAAGAG 441
|||||||||||||||
Sbjct 452 TGGCTACCTTAAGAG 466
>seq227
Length=146938
Score = 181 bits (200), Expect = 3e-43
Identities = 100/100 (100%), Gaps = 0/100 (0%)
Strand=Plus/Plus
Query 342 CTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGC 401
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 CTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGC 60
Query 402 GTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAG 441
||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAG 100
>seq13
Length=1140975
Score = 132 bits (146), Expect = 2e-28
Identities = 78/81 (96%), Gaps = 0/81 (0%)
Strand=Plus/Minus
Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66
|||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 81646 CTTTTGCTCTACTGGAGATTTCTGTTCTCCATGAGCTCCCCTTAGGACACCTGCGTTATG 81587
Query 67 GTTTAACAGATGTGCCGCCCC 87
|||||||||||||||||||||
Sbjct 81586 GTTTAACAGATGTGCCGCCCC 81566
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1635195634016
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |