Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rachicladosporium_20antarcticum_20[genbank_20GCA_5F002077065.1_20201 7-04-03] 267 sequences; 47,410,550 total letters Query= NC_032108.1 Length=589068 Score E Sequences producing significant alignments: (Bits) Value seq183 122 3e-22 seq217 89.7 2e-12 >seq183 Length=685938 Score = 122 bits (134), Expect = 3e-22 Identities = 148/201 (74%), Gaps = 2/201 (1%) Strand=Plus/Plus Query 364379 CCTCGCAAGGCTCCCACCTTGGAGGCTACAATCTCCATGAGCTTACCAATAGTCATACGA 364438 || |||| ||| || || |||||| | | ||| || | | | || ||||| || Sbjct 169397 CCGCGCAGGGCACCGACTTTGGAGAGGAGACACTCGATCAAATGGGCTATGGTCATGCGG 169456 Query 364439 GAGGGAATGGAGAGAGGGTTGATGATGATGTCAGGCACCATGCCGTCAGCGGTAAAGGGC 364498 |||||||||| | |||| |||||||||||||| || || ||||| || || || |||||| Sbjct 169457 GAGGGAATGGCGTGAGGATTGATGATGATGTCGGGAACGATGCCATCGGCTGTGAAGGGC 169516 Query 364499 ATATCTTCGGGAGGAACGATGAGACCAATGGTTCCCTTTTGCGCATAGCGAGAAGCAAAC 364558 || ||||| | || | ||| ||||||||| || || || | | ||| ||||||||| Sbjct 169517 ATGTCTTCTTGGCGATAGGTGATACCAATGGTACCTTTCTGACCGTGGCGGGAAGCAAAC 169576 Query 364559 TTGTCGCCAATGACTGGGTCA 364579 |||||||| || ||||| || Sbjct 169577 TTGTCGCCGAT--CTGGGGCA 169595 >seq217 Length=1262075 Score = 89.7 bits (98), Expect = 2e-12 Identities = 109/146 (75%), Gaps = 2/146 (1%) Strand=Plus/Minus Query 364425 CAATAGTCATACGAGAGGGAATGGAGAGAGGGTTGATGATGATGTCAGGCACCATGCCGT 364484 |||| ||||| || ||||| || | | | ||||||||||||||||| || || ||||||| Sbjct 961196 CAATTGTCATGCGGGAGGGGATAGCGTGGGGGTTGATGATGATGTCGGGGACGATGCCGT 961137 Query 364485 CAGCGGTAAAGGGCATATCTTC-GGGAGGAACGATGAGACCAATGGTTCCCTTTTGCGCA 364543 | || || || ||||| ||||| || || | | | | ||| || || || || || | Sbjct 961136 CGGCTGTGAAAGGCATGTCTTCTTGGCGGTA-GGTAATACCGATTGTACCTTTCTGACCG 961078 Query 364544 TAGCGAGAAGCAAACTTGTCGCCAAT 364569 | ||| || || |||||||| ||||| Sbjct 961077 TGGCGGGAGGCGAACTTGTCACCAAT 961052 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1884879951921431