Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raffaelea_20quercivora_20[genbank_20GCA_5F001662465.1_202016-06-08] 26 sequences; 25,862,907 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq2 401 5e-107 seq1 140 3e-28 >seq2 Length=4288194 Score = 401 bits (444), Expect = 5e-107 Identities = 1239/1883 (66%), Gaps = 58/1883 (3%) Strand=Plus/Minus Query 65078 TCGACCGTGAACTGGATCGCATTAGCAGCCGCCTTGGTCCTAAGATAGTACATGCCGGTC 65137 ||||||||||||||||| | | || || |||| || | || ||||||||||| ||| Sbjct 3317690 TCGACCGTGAACTGGATGGGCTGTGCGGCAGCCTGCGTGCGCAGGTAGTACATGCCCGTC 3317631 Query 65138 TTGAGGCC-AGCACGCCAAGCATAGAAATGCATCGATGATAATTTTGCATAAT-TCGGCT 65195 |||||||| ||| ||| | ||| ||||| || | || |||| | |||||| Sbjct 3317630 TTGAGGCCCAGCTT-CCAGCCCGTGAAGTGCATGCTTG-TGATCTTGCCCATGGTCGGCT 3317573 Query 65196 CGGCCACATGCATATTCAACGACTGACTCTGATCGATGTAACGACCACGATCTGCAGCCA 65255 | || || || |||| |||||| ||| ||||| | |||||| |||||||||| Sbjct 3317572 CACGCATGTGGATGTTCAGCGACTGCGACTGGTCGATAAAGGCACCACGGTCTGCAGCCA 3317513 Query 65256 TGT---CAATGATACGACGTCCCGATATCTCCCAGACGGTCTTGTACAGGCGACGT-ACC 65311 | | |||| | || | ||| |||||||| || |||||||||||| | | | | Sbjct 3317512 TCTGCACAATCGTCCGCTG---CGAGATCTCCCACACCGTCTTGTACAGG-GCCTTGATG 3317457 Query 65312 TCAATTGGAATCTCCTCAATGTCCTGGACTGAACCACGACGTGCAATAATGCGATTACGC 65371 || || || | ||||| ||||| ||||| ||||| ||||| || | Sbjct 3317456 TCGGCCGGGATGTTGGGAATGTTCTGGATCGAACCGTTCTCCGCAATGATGCGGTTCTTC 3317397 Query 65372 ATCGACTCTGACCACAAACCCAAATCGATAAGATG-TTGAACCAAGTGACGA-TTGATGA 65429 || || ||||||| ||||| |||| || | |||| | || ||| |||| | Sbjct 3317396 ATGTTGTCCGACCACAGACCCATGTCGACCAGGTCCTTGAGC--AGCCACGGGTTGACCA 3317339 Query 65430 CTTGGAACTCGCCGGACAGTACACGACGGACATAGATGTTGGACGTGATGGGTTCAAAGG 65489 | ||||||||||||| ||| ||||| || ||||||||||||||| || || ||| Sbjct 3317338 CCTGGAACTCGCCGGCCAGCACACGCCGCGAGTAGATGTTGGACGTGTATGGCTCGAAGC 3317279 Query 65490 ATTCAGTGTTGCCTAGAATTTGGGCAGTAGATGCAGTTGGCATGGGAGCGACCAACAATG 65549 | || ||||||| ||||| || | || || || || ||||| || || |||| || Sbjct 3317278 ACTCGTTGTTGCCCAGAATCTGCGACGTCGACGCCGTCGGCATCGGCGCCACCAGCAGAC 3317219 Query 65550 AGTTTCGCAATCCGTTCATTTCAATGTTGTGACGCAATTCGTCCCAGTTCCACATCGGTT 65609 ||| |||| |||| | | || || | |||| |||||||| ||||| ||| Sbjct 3317218 TGTTGCGCACACCGTGCTCCTTGATCTTCAGCCGCAGCGAGTCCCAGTCCCACA--GGTC 3317161 Query 65610 TATCGTCGACATCCACGGGCCACATATCCTGTTGCAGGGTTCC--GATACTGGCCGGTGA 65667 || | | || ||| |||||| || | ||||| | || | || | || || Sbjct 3317160 ---CGAGGGCGTC-ACGTCCCACATGTCGGGCTGCAGAATGCCCTGCGACA--CAGGAGA 3317107 Query 65668 ACCGAGGAAACTATCGTACACTCCCTCCTCCTTGGCAAGTTGACAGCTGGTCTCG--AGT 65725 || | | | ||| ||||| |||||| || || | || || || Sbjct 3317106 GCCCTCATATGTTTGGTAGGTACCCTCGATCTTGGCCAGCGCGCA-CGACTC-CGTCAGC 3317049 Query 65726 GCGGCAAAATAAATGGTCTCGAAAATGCGTCGATTAAGTTCACGTGCCTCATCGCTCTCG 65785 || || || ||||||||||| || | || || |||||||| ||| Sbjct 3317048 GCCGCGTGGTAGATGGTCTCGAAGATCTGCTTGTTCAGCAGGCGTGCCTCGGGCGACTCA 3316989 Query 65786 TACGGCATACCCATCAGGACAAAAGTGTCGGCCAGACCTTGAACTCCAATACCGATGGGA 65845 | ||||| | || | | || | ||| |||||||| || || || | ||| ||||| Sbjct 3316988 AAGGGCATGCGCAGCGCCAGGAAGGCGTCTGCCAGACCCTGCACACCCAGACCAATGGGC 3316929 Query 65846 CGATGACGCAAATTGGAACGTCTCGCCTCAGGTACAGGGTAGTAATTGATATCGATAATG 65905 || || |||| ||| || ||||| || || |||||||| || | || || ||| Sbjct 3316928 CGGTGGCGCATGTTGCTGTTTCGTGCCTCGGGCACGGGGTAGTAGTTCACGTCAATGATG 3316869 Query 65906 CGATTCAAATTGCGTGTCACCACATGCACGATACGTCG--CAATTGTTCGAAATCAAAAT 65963 || || | ||||| |||| ||| || ||||| || | | ||| ||| Sbjct 3316868 CGGTTGAGGTTGCGGACAACCAACTGCGTGA--CGTCGTGCAGCCGCTGGAAGTCA---- 3316815 Query 65964 GTTTAGGACGATCGGGAGTGCCGGACACCACAAACTTGGGAAGGGCAAGAGATGCGAGGT 66023 || ||| ||| || | | || ||| ||||| || || || || | || Sbjct 3316814 ---TACGAC--TCGT---TGTTATAGTCGACGAACGACGGAAGAGCCAGCGAGGCCAAGT 3316763 Query 66024 TGCAGACAGCTATCTCGTCAGGAGCGGTATACTCGACAATTTCGGTGCACAGATTACTGC 66083 |||| || || | |||||| || || | ||||| ||||| || |||||||| || || Sbjct 3316762 TGCACACGGCCACCTCGTCCGGCGCCGAGTACTCCACAATCTCCGTGCACAGGTTCGAGC 3316703 Query 66084 AGCGTATGGTGCCCAAATTCTGTTGATTACTCTTGCGATTGCATGCATCCTTGTACATCA 66143 ||| |||||||||| |||| || || |||||||| ||||| |||||||| | || Sbjct 3316702 TGCGGATGGTGCCCAGGTTCTTCTGGTTGCTCTTGCGGTTGCAGTGGTCCTTGTAGAGCA 3316643 Query 66144 TGTACGGAGTGCCGGTCTCAACTTGGGACTCAATGATGGCGTGCCAAAGAGCGCGTGCCT 66203 || |||| |||| ||||| || | ||| | ||||||| ||| || | |||| Sbjct 3316642 TGAACGGGTTGCCCGTCTCCGTCTGCGCCTCCAGAATGGCGTACCACAGCTTCTGGGCCT 3316583 Query 66204 TCACCGTACGTACCGCC-CTACCTTTGCGTTCGTAATGTTCGTAGAGGTGTTCGAAGGAT 66262 | ||| | | ||| || | || | || ||||| | ||||| || || || Sbjct 3316582 TGACCTT-CTTACGACCACGGCCCTCGCTCTCGTACTTCTCGTACAGCGCCTCAAACTCC 3316524 Query 66263 TCACCCCATACTTCGGACAGACATGGACACTTGTGTGGACACATCAGCGACCAATCACCA 66322 || || | || | ||| | | |||| | || |||||||||| ||| || || Sbjct 3316523 TCGCCGTAGCAATCCGCCAGGCCGGCGCACTCATTGGGGCACATCAGCGTCCACTCGCCG 3316464 Query 66323 TCCTGTTCT--ACACGACGCATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGC 66380 | || ||| ||||| ||| || ||||| || |||||||| ||| ||| ||||| | Sbjct 3316463 T--TGGTCTCCACACGCTTCATGAACAGATCGGGGATCCAGAGAGCGAGGAAAAGATCAC 3316406 Query 66381 GTGCTCGTTGCTCCTCAATGCCGTGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGG 66440 | || || |||||| | || || || || |||| ||| ||||||||||||| |||| Sbjct 3316405 GGGCACGGACCTCCTCCTTACCCTGGTTCTTCCGCAGGTCCAGGAACTCAAAGACATCGG 3316346 Query 66441 CATGCCATGGTTCCAGGTAGATGGCGAACGAGCCCATACGTTTGCCGCCACCTTGGTCGA 66500 | ||||| || |||| ||||||| ||| | || || ||| |||||| ||||| | Sbjct 3316345 CGTGCCACGGCTCCAAGTAGATGCAGAAGGCACCGGGGCGCTTGTTGCCACCCTGGTCCA 3316286 Query 66501 CGTAGCGAGCGACATTGTTGAAGACACGCAACATCGGTACGAGCCCGTTAGATTTGCCAT 66560 ||||||| || ||||| |||||||| | ||| || | || ||||| ||| |||| | Sbjct 3316285 CGTAGCGGGCCGTGTTGTTAAAGACACGAAGCATAGGGATGATGCCGTTGGATGTGCCGT 3316226 Query 66561 TGGTGCCGTCGATGGGGGATCCTCGTGCCCGTATATCGTGAACATTCAGACCAATACCAC 66620 |||||||| | ||| ||| || || || || ||| ||||||||||| || |||| Sbjct 3316225 TGGTGCCGGCAATGTAGGAGCCGGTGGCGCGAATGCGGTGGACATTCAGACCGATGCCAC 3316166 Query 66621 CGGCCGTCTTCGAGATGGCAGCACAATCGGC--CACTGTCCGGAATATGCCGTCAATGGA 66678 |||||||||| ||||| ||||| || | | || | | ||||| |||||| Sbjct 3316165 CGGCCGTCTTGGAGATCATGGCACA--CGTCTTGAGCGTGTCGTAGATGCCCTCAATGCT 3316108 Query 66679 GTCACCCTTGATGGTCAGGAGGTAGCATGAACTAAGTTGGGGTTTGGGTGTGGCGGCCGA 66738 ||| |||| ||| || |||| |||| ||| || || | | ||| ||| |||| Sbjct 3316107 GTCGTCCTTCATGTCCACGAGGAAGCAGGAAGACAGCTGAGCCTGGGGCGTGCCGGCGTT 3316048 Query 66739 GAAGAGGGTGGGTGTAGCGTGCGTAAAGTAATGGCGAGACATGTAATTGTACGTCTCGAT 66798 |||||| || || | ||||| || ||| | | | |||||||| ||||| ||||||| Sbjct 3316047 GAAGAGCGTCGGCGAGGCGTGTGTGAAGAACTTGTTGGACATGTAGTTGTATGTCTCGAC 3315988 Query 66799 GACAGCATCAATGTTTTCGCCATGAATCCCGA-GTGCACATCGCATCAGGAGGTATTGAG 66857 || || | | || || || || | | |||| ||||| | | || || | Sbjct 3315987 AACGCGCTCCACATCGTCACCCCAGATACCAACGGCCACA-CGCATGATCATGTGCTGCG 3315929 Query 66858 GCCGTTCGACCAGCCGATCCTTGATATGCATTAAGTAGGAGCGTTCCAGGGTCTTGATAC 66917 |||| ||||| | | | | | || | | | ||||||||| ||||||||||||| | Sbjct 3315928 GCCGCTCGACAATCTTACCGTCGAGCTTGAGGAGGTAGGAGCGCTCCAGGGTCTTGAAGC 3315869 Query 66918 CAAAGTACGAGTAATTGAAATCG 66940 ||||||| ||| ||||| ||| Sbjct 3315868 CAAAGTATTGGTAGTTGAAGTCG 3315846 >seq1 Length=5014741 Score = 140 bits (154), Expect = 3e-28 Identities = 295/437 (68%), Gaps = 5/437 (1%) Strand=Plus/Plus Query 61496 TGGCATTTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGT 61555 |||||||||| | |||||||| | || ||||| || | || | | ||||| ||| Sbjct 1638430 TGGCATTTGCTGCCGTCGAGGGCATTTTCTTCAGCGGCGCCTTCTCGTCCATCTTCTGGC 1638489 Query 61556 TGAAGAAACGTGGACTTATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACG 61615 | ||||| ||||| || ||||| |||||||| ||| ||||||| |||| || ||||||| Sbjct 1638490 TCAAGAAGCGTGGCCTGATGCCTGGTCTGACTTTCTCCAATGAGCTGATTTCCCGCGACG 1638549 Query 61616 AGGGCATGCATTGTGATTTTGCTGTTTTGCTATTCAAACGCTATCTGGTGAATCGTCCGT 61675 ||||| |||| || ||||| |||| ||| | | ||| || || ||| Sbjct 1638550 AGGGCCTGCACACCGACTTTGCCTGCCTGCTGTTC---TCCCACCTGAACAACCGCCCGA 1638606 Query 61676 CGGAGGAGCGTGTGGGTGAGATTGTTCGT-GAGGCGGTAACTATCGAACAGGAATTTCTG 61734 || || | || ||| |||| || || || | || || ||||| ||| || Sbjct 1638607 GCAAGCAGATCATCCAGGACATT-ATCGTCGATGCCGTCAAGATTGAGCAGGAGTTTTTG 1638665 Query 61735 ACTGACGCTTTGCCCGTCTCACTCATCGGCATGAATTGTGGACTAATGTCGCAGTATATT 61794 || || || ||||| | || | |||||||| || ||| |||||| ||| Sbjct 1638666 ACCGAGGCCCTGCCCTGTGCTCTTCTGGGCATGAACGCCACCCTCATGAAGCAGTACATT 1638725 Query 61795 GAATTTGTTGCCGACCGTCTGTTGGTCGATTTGGGTATGAAGCGGATCTATAATACGAAA 61854 || || ||||||||||||||| |||||| | | || | | | |||| | | Sbjct 1638726 GAGTTCGTTGCCGACCGTCTGCTGGTCGCTCTCGGCAACGACAAGGTCTACCGCTCCACC 1638785 Query 61855 AACCCATTTGATTTCATGGACATGATTTCGCTGGATGGCAAGACGAATTTTTTCGAGAAA 61914 || || ||||| || ||||| | || || |||| |||||||| || || |||||||| Sbjct 1638786 AATCCCTTTGACTTTATGGAGAACATCTCCCTGGGCGGCAAGACCAACTTCTTCGAGAAG 1638845 Query 61915 CGTGTAGGCGACTATCA 61931 || || |||||||| || Sbjct 1638846 CGCGTCGGCGACTACCA 1638862 Score = 123 bits (136), Expect = 2e-23 Identities = 209/297 (70%), Gaps = 7/297 (2%) Strand=Plus/Plus Query 61087 ATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTG 61146 || |||| |||||||| ||| || ||||| |||||||||| |||||| | || || Sbjct 1637953 ATCTGGCAAATGTACAAGAAGCACGAGGCTTCTTTCTGGACGGCCGAGGAGATTGACCTG 1638012 Query 61147 TCCAAAGACATGAATGACTGGGAG---CGTTT-ATCGAGCGGTGAACAACATTTCATTAA 61202 ||||| ||| || | |||||| | || | | ||| || || | ||||| Sbjct 1638013 TCCAAGGACCTGCACGACTGGCACAACCGCCTGAACGA-CGACGAGCGCTTCTTCATCTC 1638071 Query 61203 ACATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACG 61262 || | | || ||||| ||||| ||||| || |||||||| ||||| | | || || Sbjct 1638072 CCACATCCTCGCCTTCTTCGCCGCCTCGGATGGCATCGTCAACGAGAACCTCGTCGAGCG 1638131 Query 61263 TTTC-GCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCA 61321 ||| |||| | |||| || ||| | ||||| || || || |||||||||||||| | Sbjct 1638132 CTTCAGCGCCG-AGGTCCAGGTGCCCGAGGCCCGCTGCTTTTACGGCTTCCAGATCATGA 1638190 Query 61322 TGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGC 61378 ||||||| | ||||| |||| ||| | | ||||| || || ||||||| ||||| Sbjct 1638191 TGGAGAACATTCACTCCGAGACCTACTCTCTGCTCATTGACACCTACATCAAGGAGC 1638247 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397567874020640