Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Raffaelea_20quercivora_20[genbank_20GCA_5F001662465.1_202016-06-08]
26 sequences; 25,862,907 total letters
Query= NC_010671.1
Length=124279
Score E
Sequences producing significant alignments: (Bits) Value
seq2 401 5e-107
seq1 140 3e-28
>seq2
Length=4288194
Score = 401 bits (444), Expect = 5e-107
Identities = 1239/1883 (66%), Gaps = 58/1883 (3%)
Strand=Plus/Minus
Query 65078 TCGACCGTGAACTGGATCGCATTAGCAGCCGCCTTGGTCCTAAGATAGTACATGCCGGTC 65137
||||||||||||||||| | | || || |||| || | || ||||||||||| |||
Sbjct 3317690 TCGACCGTGAACTGGATGGGCTGTGCGGCAGCCTGCGTGCGCAGGTAGTACATGCCCGTC 3317631
Query 65138 TTGAGGCC-AGCACGCCAAGCATAGAAATGCATCGATGATAATTTTGCATAAT-TCGGCT 65195
|||||||| ||| ||| | ||| ||||| || | || |||| | ||||||
Sbjct 3317630 TTGAGGCCCAGCTT-CCAGCCCGTGAAGTGCATGCTTG-TGATCTTGCCCATGGTCGGCT 3317573
Query 65196 CGGCCACATGCATATTCAACGACTGACTCTGATCGATGTAACGACCACGATCTGCAGCCA 65255
| || || || |||| |||||| ||| ||||| | |||||| ||||||||||
Sbjct 3317572 CACGCATGTGGATGTTCAGCGACTGCGACTGGTCGATAAAGGCACCACGGTCTGCAGCCA 3317513
Query 65256 TGT---CAATGATACGACGTCCCGATATCTCCCAGACGGTCTTGTACAGGCGACGT-ACC 65311
| | |||| | || | ||| |||||||| || |||||||||||| | | | |
Sbjct 3317512 TCTGCACAATCGTCCGCTG---CGAGATCTCCCACACCGTCTTGTACAGG-GCCTTGATG 3317457
Query 65312 TCAATTGGAATCTCCTCAATGTCCTGGACTGAACCACGACGTGCAATAATGCGATTACGC 65371
|| || || | ||||| ||||| ||||| ||||| ||||| || |
Sbjct 3317456 TCGGCCGGGATGTTGGGAATGTTCTGGATCGAACCGTTCTCCGCAATGATGCGGTTCTTC 3317397
Query 65372 ATCGACTCTGACCACAAACCCAAATCGATAAGATG-TTGAACCAAGTGACGA-TTGATGA 65429
|| || ||||||| ||||| |||| || | |||| | || ||| |||| |
Sbjct 3317396 ATGTTGTCCGACCACAGACCCATGTCGACCAGGTCCTTGAGC--AGCCACGGGTTGACCA 3317339
Query 65430 CTTGGAACTCGCCGGACAGTACACGACGGACATAGATGTTGGACGTGATGGGTTCAAAGG 65489
| ||||||||||||| ||| ||||| || ||||||||||||||| || || |||
Sbjct 3317338 CCTGGAACTCGCCGGCCAGCACACGCCGCGAGTAGATGTTGGACGTGTATGGCTCGAAGC 3317279
Query 65490 ATTCAGTGTTGCCTAGAATTTGGGCAGTAGATGCAGTTGGCATGGGAGCGACCAACAATG 65549
| || ||||||| ||||| || | || || || || ||||| || || |||| ||
Sbjct 3317278 ACTCGTTGTTGCCCAGAATCTGCGACGTCGACGCCGTCGGCATCGGCGCCACCAGCAGAC 3317219
Query 65550 AGTTTCGCAATCCGTTCATTTCAATGTTGTGACGCAATTCGTCCCAGTTCCACATCGGTT 65609
||| |||| |||| | | || || | |||| |||||||| ||||| |||
Sbjct 3317218 TGTTGCGCACACCGTGCTCCTTGATCTTCAGCCGCAGCGAGTCCCAGTCCCACA--GGTC 3317161
Query 65610 TATCGTCGACATCCACGGGCCACATATCCTGTTGCAGGGTTCC--GATACTGGCCGGTGA 65667
|| | | || ||| |||||| || | ||||| | || | || | || ||
Sbjct 3317160 ---CGAGGGCGTC-ACGTCCCACATGTCGGGCTGCAGAATGCCCTGCGACA--CAGGAGA 3317107
Query 65668 ACCGAGGAAACTATCGTACACTCCCTCCTCCTTGGCAAGTTGACAGCTGGTCTCG--AGT 65725
|| | | | ||| ||||| |||||| || || | || || ||
Sbjct 3317106 GCCCTCATATGTTTGGTAGGTACCCTCGATCTTGGCCAGCGCGCA-CGACTC-CGTCAGC 3317049
Query 65726 GCGGCAAAATAAATGGTCTCGAAAATGCGTCGATTAAGTTCACGTGCCTCATCGCTCTCG 65785
|| || || ||||||||||| || | || || |||||||| |||
Sbjct 3317048 GCCGCGTGGTAGATGGTCTCGAAGATCTGCTTGTTCAGCAGGCGTGCCTCGGGCGACTCA 3316989
Query 65786 TACGGCATACCCATCAGGACAAAAGTGTCGGCCAGACCTTGAACTCCAATACCGATGGGA 65845
| ||||| | || | | || | ||| |||||||| || || || | ||| |||||
Sbjct 3316988 AAGGGCATGCGCAGCGCCAGGAAGGCGTCTGCCAGACCCTGCACACCCAGACCAATGGGC 3316929
Query 65846 CGATGACGCAAATTGGAACGTCTCGCCTCAGGTACAGGGTAGTAATTGATATCGATAATG 65905
|| || |||| ||| || ||||| || || |||||||| || | || || |||
Sbjct 3316928 CGGTGGCGCATGTTGCTGTTTCGTGCCTCGGGCACGGGGTAGTAGTTCACGTCAATGATG 3316869
Query 65906 CGATTCAAATTGCGTGTCACCACATGCACGATACGTCG--CAATTGTTCGAAATCAAAAT 65963
|| || | ||||| |||| ||| || ||||| || | | ||| |||
Sbjct 3316868 CGGTTGAGGTTGCGGACAACCAACTGCGTGA--CGTCGTGCAGCCGCTGGAAGTCA---- 3316815
Query 65964 GTTTAGGACGATCGGGAGTGCCGGACACCACAAACTTGGGAAGGGCAAGAGATGCGAGGT 66023
|| ||| ||| || | | || ||| ||||| || || || || | ||
Sbjct 3316814 ---TACGAC--TCGT---TGTTATAGTCGACGAACGACGGAAGAGCCAGCGAGGCCAAGT 3316763
Query 66024 TGCAGACAGCTATCTCGTCAGGAGCGGTATACTCGACAATTTCGGTGCACAGATTACTGC 66083
|||| || || | |||||| || || | ||||| ||||| || |||||||| || ||
Sbjct 3316762 TGCACACGGCCACCTCGTCCGGCGCCGAGTACTCCACAATCTCCGTGCACAGGTTCGAGC 3316703
Query 66084 AGCGTATGGTGCCCAAATTCTGTTGATTACTCTTGCGATTGCATGCATCCTTGTACATCA 66143
||| |||||||||| |||| || || |||||||| ||||| |||||||| | ||
Sbjct 3316702 TGCGGATGGTGCCCAGGTTCTTCTGGTTGCTCTTGCGGTTGCAGTGGTCCTTGTAGAGCA 3316643
Query 66144 TGTACGGAGTGCCGGTCTCAACTTGGGACTCAATGATGGCGTGCCAAAGAGCGCGTGCCT 66203
|| |||| |||| ||||| || | ||| | ||||||| ||| || | ||||
Sbjct 3316642 TGAACGGGTTGCCCGTCTCCGTCTGCGCCTCCAGAATGGCGTACCACAGCTTCTGGGCCT 3316583
Query 66204 TCACCGTACGTACCGCC-CTACCTTTGCGTTCGTAATGTTCGTAGAGGTGTTCGAAGGAT 66262
| ||| | | ||| || | || | || ||||| | ||||| || || ||
Sbjct 3316582 TGACCTT-CTTACGACCACGGCCCTCGCTCTCGTACTTCTCGTACAGCGCCTCAAACTCC 3316524
Query 66263 TCACCCCATACTTCGGACAGACATGGACACTTGTGTGGACACATCAGCGACCAATCACCA 66322
|| || | || | ||| | | |||| | || |||||||||| ||| || ||
Sbjct 3316523 TCGCCGTAGCAATCCGCCAGGCCGGCGCACTCATTGGGGCACATCAGCGTCCACTCGCCG 3316464
Query 66323 TCCTGTTCT--ACACGACGCATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGC 66380
| || ||| ||||| ||| || ||||| || |||||||| ||| ||| ||||| |
Sbjct 3316463 T--TGGTCTCCACACGCTTCATGAACAGATCGGGGATCCAGAGAGCGAGGAAAAGATCAC 3316406
Query 66381 GTGCTCGTTGCTCCTCAATGCCGTGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGG 66440
| || || |||||| | || || || || |||| ||| ||||||||||||| ||||
Sbjct 3316405 GGGCACGGACCTCCTCCTTACCCTGGTTCTTCCGCAGGTCCAGGAACTCAAAGACATCGG 3316346
Query 66441 CATGCCATGGTTCCAGGTAGATGGCGAACGAGCCCATACGTTTGCCGCCACCTTGGTCGA 66500
| ||||| || |||| ||||||| ||| | || || ||| |||||| ||||| |
Sbjct 3316345 CGTGCCACGGCTCCAAGTAGATGCAGAAGGCACCGGGGCGCTTGTTGCCACCCTGGTCCA 3316286
Query 66501 CGTAGCGAGCGACATTGTTGAAGACACGCAACATCGGTACGAGCCCGTTAGATTTGCCAT 66560
||||||| || ||||| |||||||| | ||| || | || ||||| ||| |||| |
Sbjct 3316285 CGTAGCGGGCCGTGTTGTTAAAGACACGAAGCATAGGGATGATGCCGTTGGATGTGCCGT 3316226
Query 66561 TGGTGCCGTCGATGGGGGATCCTCGTGCCCGTATATCGTGAACATTCAGACCAATACCAC 66620
|||||||| | ||| ||| || || || || ||| ||||||||||| || ||||
Sbjct 3316225 TGGTGCCGGCAATGTAGGAGCCGGTGGCGCGAATGCGGTGGACATTCAGACCGATGCCAC 3316166
Query 66621 CGGCCGTCTTCGAGATGGCAGCACAATCGGC--CACTGTCCGGAATATGCCGTCAATGGA 66678
|||||||||| ||||| ||||| || | | || | | ||||| ||||||
Sbjct 3316165 CGGCCGTCTTGGAGATCATGGCACA--CGTCTTGAGCGTGTCGTAGATGCCCTCAATGCT 3316108
Query 66679 GTCACCCTTGATGGTCAGGAGGTAGCATGAACTAAGTTGGGGTTTGGGTGTGGCGGCCGA 66738
||| |||| ||| || |||| |||| ||| || || | | ||| ||| ||||
Sbjct 3316107 GTCGTCCTTCATGTCCACGAGGAAGCAGGAAGACAGCTGAGCCTGGGGCGTGCCGGCGTT 3316048
Query 66739 GAAGAGGGTGGGTGTAGCGTGCGTAAAGTAATGGCGAGACATGTAATTGTACGTCTCGAT 66798
|||||| || || | ||||| || ||| | | | |||||||| ||||| |||||||
Sbjct 3316047 GAAGAGCGTCGGCGAGGCGTGTGTGAAGAACTTGTTGGACATGTAGTTGTATGTCTCGAC 3315988
Query 66799 GACAGCATCAATGTTTTCGCCATGAATCCCGA-GTGCACATCGCATCAGGAGGTATTGAG 66857
|| || | | || || || || | | |||| ||||| | | || || |
Sbjct 3315987 AACGCGCTCCACATCGTCACCCCAGATACCAACGGCCACA-CGCATGATCATGTGCTGCG 3315929
Query 66858 GCCGTTCGACCAGCCGATCCTTGATATGCATTAAGTAGGAGCGTTCCAGGGTCTTGATAC 66917
|||| ||||| | | | | | || | | | ||||||||| ||||||||||||| |
Sbjct 3315928 GCCGCTCGACAATCTTACCGTCGAGCTTGAGGAGGTAGGAGCGCTCCAGGGTCTTGAAGC 3315869
Query 66918 CAAAGTACGAGTAATTGAAATCG 66940
||||||| ||| ||||| |||
Sbjct 3315868 CAAAGTATTGGTAGTTGAAGTCG 3315846
>seq1
Length=5014741
Score = 140 bits (154), Expect = 3e-28
Identities = 295/437 (68%), Gaps = 5/437 (1%)
Strand=Plus/Plus
Query 61496 TGGCATTTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGT 61555
|||||||||| | |||||||| | || ||||| || | || | | ||||| |||
Sbjct 1638430 TGGCATTTGCTGCCGTCGAGGGCATTTTCTTCAGCGGCGCCTTCTCGTCCATCTTCTGGC 1638489
Query 61556 TGAAGAAACGTGGACTTATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACG 61615
| ||||| ||||| || ||||| |||||||| ||| ||||||| |||| || |||||||
Sbjct 1638490 TCAAGAAGCGTGGCCTGATGCCTGGTCTGACTTTCTCCAATGAGCTGATTTCCCGCGACG 1638549
Query 61616 AGGGCATGCATTGTGATTTTGCTGTTTTGCTATTCAAACGCTATCTGGTGAATCGTCCGT 61675
||||| |||| || ||||| |||| ||| | | ||| || || |||
Sbjct 1638550 AGGGCCTGCACACCGACTTTGCCTGCCTGCTGTTC---TCCCACCTGAACAACCGCCCGA 1638606
Query 61676 CGGAGGAGCGTGTGGGTGAGATTGTTCGT-GAGGCGGTAACTATCGAACAGGAATTTCTG 61734
|| || | || ||| |||| || || || | || || ||||| ||| ||
Sbjct 1638607 GCAAGCAGATCATCCAGGACATT-ATCGTCGATGCCGTCAAGATTGAGCAGGAGTTTTTG 1638665
Query 61735 ACTGACGCTTTGCCCGTCTCACTCATCGGCATGAATTGTGGACTAATGTCGCAGTATATT 61794
|| || || ||||| | || | |||||||| || ||| |||||| |||
Sbjct 1638666 ACCGAGGCCCTGCCCTGTGCTCTTCTGGGCATGAACGCCACCCTCATGAAGCAGTACATT 1638725
Query 61795 GAATTTGTTGCCGACCGTCTGTTGGTCGATTTGGGTATGAAGCGGATCTATAATACGAAA 61854
|| || ||||||||||||||| |||||| | | || | | | |||| | |
Sbjct 1638726 GAGTTCGTTGCCGACCGTCTGCTGGTCGCTCTCGGCAACGACAAGGTCTACCGCTCCACC 1638785
Query 61855 AACCCATTTGATTTCATGGACATGATTTCGCTGGATGGCAAGACGAATTTTTTCGAGAAA 61914
|| || ||||| || ||||| | || || |||| |||||||| || || ||||||||
Sbjct 1638786 AATCCCTTTGACTTTATGGAGAACATCTCCCTGGGCGGCAAGACCAACTTCTTCGAGAAG 1638845
Query 61915 CGTGTAGGCGACTATCA 61931
|| || |||||||| ||
Sbjct 1638846 CGCGTCGGCGACTACCA 1638862
Score = 123 bits (136), Expect = 2e-23
Identities = 209/297 (70%), Gaps = 7/297 (2%)
Strand=Plus/Plus
Query 61087 ATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTG 61146
|| |||| |||||||| ||| || ||||| |||||||||| |||||| | || ||
Sbjct 1637953 ATCTGGCAAATGTACAAGAAGCACGAGGCTTCTTTCTGGACGGCCGAGGAGATTGACCTG 1638012
Query 61147 TCCAAAGACATGAATGACTGGGAG---CGTTT-ATCGAGCGGTGAACAACATTTCATTAA 61202
||||| ||| || | |||||| | || | | ||| || || | |||||
Sbjct 1638013 TCCAAGGACCTGCACGACTGGCACAACCGCCTGAACGA-CGACGAGCGCTTCTTCATCTC 1638071
Query 61203 ACATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACG 61262
|| | | || ||||| ||||| ||||| || |||||||| ||||| | | || ||
Sbjct 1638072 CCACATCCTCGCCTTCTTCGCCGCCTCGGATGGCATCGTCAACGAGAACCTCGTCGAGCG 1638131
Query 61263 TTTC-GCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCA 61321
||| |||| | |||| || ||| | ||||| || || || |||||||||||||| |
Sbjct 1638132 CTTCAGCGCCG-AGGTCCAGGTGCCCGAGGCCCGCTGCTTTTACGGCTTCCAGATCATGA 1638190
Query 61322 TGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGC 61378
||||||| | ||||| |||| ||| | | ||||| || || ||||||| |||||
Sbjct 1638191 TGGAGAACATTCACTCCGAGACCTACTCTCTGCTCATTGACACCTACATCAAGGAGC 1638247
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 397567874020640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |