Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Raffaelea_20quercivora_20[genbank_20GCA_5F001662465.1_202016-06-08]
26 sequences; 25,862,907 total letters
Query= NC_027867.1
Length=651523
Score E
Sequences producing significant alignments: (Bits) Value
seq2 109 2e-18
seq1 87.8 7e-12
>seq2
Length=4288194
Score = 109 bits (120), Expect = 2e-18
Identities = 135/182 (74%), Gaps = 2/182 (1%)
Strand=Plus/Minus
Query 448639 GGCGCCGTAGGACTTGAAGGAGACGCGCTCCATGTCGCCCAATCGGAGCCCGCCGTGTCG 448698
||||||||||| ||| || |||||||||| ||||| | || || ||||||| ||
Sbjct 3450395 GGCGCCGTAGGCAATGAGACAGTCGCGCTCCATCTCGCCGAGGCGCAGGCCGCCGTCGCG 3450336
Query 448699 CAACTTGCCCTCGGTGGGCTGCCGCGTGAGGAGCGAGTACGGTCCCCTCTGC-CGCGTGT 448757
| | ||| ||||| ||||| |||||||| | | | ||| ||||| || |||| ||
Sbjct 3450335 CGAGCGGCCTTCGGTCGGCTGGCGCGTGAGAATGGCGCGCGG-CCCCTTGGCGCGCGAGT 3450277
Query 448758 GCATCTTCTCCGAGGCCAGTTGCTTGAGGCTCTGGAAGAAGAAGGGCGCGTAGAACATGC 448817
||||||| ||| | ||| |||||||||| |||| || ||| |||| ||| ||| |||
Sbjct 3450276 GCATCTTGTCCTGGACCATGTGCTTGAGGCGCTGGTAGTAGATGGGCCCGTTGAAGATGT 3450217
Query 448818 GG 448819
||
Sbjct 3450216 GG 3450215
Score = 95.1 bits (104), Expect = 5e-14
Identities = 109/147 (74%), Gaps = 0/147 (0%)
Strand=Plus/Minus
Query 449006 GTCATGCGCGACGGGTAGGCATGCGGGTTCATGATGATGTCGGGCGTCTCGCCGGCCGCG 449065
||||| ||||||||| | | || |||||||||||||||||||| ||||| ||
Sbjct 3450025 GTCATACGCGACGGGAAACCGTGGGGGTTCATGATGATGTCGGGGACGAGGCCGGTGTCG 3449966
Query 449066 TTGAAGGGCATGTCCTCGGGGTTGACCACCAGGCCGTTGACGCCCTTCTGGCCGTGGCGG 449125
||||||||||| || | | ||| | | |||| ||||||||| ||||||||||||
Sbjct 3449965 GAAAAGGGCATGTCTTCCTGCTCGACGATGATGCCGACGACGCCCTTTTGGCCGTGGCGG 3449906
Query 449126 CTGCAGAACTTGTCCCCCTGCTCGGGC 449152
|||||||||| || |||||||
Sbjct 3449905 GACGAGAACTTGTCGCCGATCTCGGGC 3449879
>seq1
Length=5014741
Score = 87.8 bits (96), Expect = 7e-12
Identities = 102/138 (74%), Gaps = 0/138 (0%)
Strand=Plus/Minus
Query 349078 GAGAATCTCCTTGAGTCTGGGCATGCCCAGGGTCACGTTCTTGGCCGCGACGCCGGCAAA 349137
|||||| |||||||||| |||| ||||| ||||||||||| | || || || |||||
Sbjct 41273 GAGAATTTCCTTGAGTCGCGGCACACCCAGCGTCACGTTCTTCGACGACACACCAGCAAA 41214
Query 349138 GTGGAAGGTCTGGAGGGTCAACTGCGTGAGGGGCTCGCCGATGCACTGGCCCGCGAGGAT 349197
||||| || | || |||| |||||| ||||| || || |||| |||| | |
Sbjct 41213 ATGGAACGTGTTCAGCGTCATCTGCGTCGCAGGCTCACCAATCGACTGCGCCGCCAACAC 41154
Query 349198 GCCTACCATCTCGCCGGG 349215
|| ||||||||||| ||
Sbjct 41153 ACCCACCATCTCGCCCGG 41136
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 2084738488582748
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |