Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raffaelea_20quercivora_20[genbank_20GCA_5F001662465.1_202016-06-08] 26 sequences; 25,862,907 total letters Query= NC_027867.1 Length=651523 Score E Sequences producing significant alignments: (Bits) Value seq2 109 2e-18 seq1 87.8 7e-12 >seq2 Length=4288194 Score = 109 bits (120), Expect = 2e-18 Identities = 135/182 (74%), Gaps = 2/182 (1%) Strand=Plus/Minus Query 448639 GGCGCCGTAGGACTTGAAGGAGACGCGCTCCATGTCGCCCAATCGGAGCCCGCCGTGTCG 448698 ||||||||||| ||| || |||||||||| ||||| | || || ||||||| || Sbjct 3450395 GGCGCCGTAGGCAATGAGACAGTCGCGCTCCATCTCGCCGAGGCGCAGGCCGCCGTCGCG 3450336 Query 448699 CAACTTGCCCTCGGTGGGCTGCCGCGTGAGGAGCGAGTACGGTCCCCTCTGC-CGCGTGT 448757 | | ||| ||||| ||||| |||||||| | | | ||| ||||| || |||| || Sbjct 3450335 CGAGCGGCCTTCGGTCGGCTGGCGCGTGAGAATGGCGCGCGG-CCCCTTGGCGCGCGAGT 3450277 Query 448758 GCATCTTCTCCGAGGCCAGTTGCTTGAGGCTCTGGAAGAAGAAGGGCGCGTAGAACATGC 448817 ||||||| ||| | ||| |||||||||| |||| || ||| |||| ||| ||| ||| Sbjct 3450276 GCATCTTGTCCTGGACCATGTGCTTGAGGCGCTGGTAGTAGATGGGCCCGTTGAAGATGT 3450217 Query 448818 GG 448819 || Sbjct 3450216 GG 3450215 Score = 95.1 bits (104), Expect = 5e-14 Identities = 109/147 (74%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 449006 GTCATGCGCGACGGGTAGGCATGCGGGTTCATGATGATGTCGGGCGTCTCGCCGGCCGCG 449065 ||||| ||||||||| | | || |||||||||||||||||||| ||||| || Sbjct 3450025 GTCATACGCGACGGGAAACCGTGGGGGTTCATGATGATGTCGGGGACGAGGCCGGTGTCG 3449966 Query 449066 TTGAAGGGCATGTCCTCGGGGTTGACCACCAGGCCGTTGACGCCCTTCTGGCCGTGGCGG 449125 ||||||||||| || | | ||| | | |||| ||||||||| |||||||||||| Sbjct 3449965 GAAAAGGGCATGTCTTCCTGCTCGACGATGATGCCGACGACGCCCTTTTGGCCGTGGCGG 3449906 Query 449126 CTGCAGAACTTGTCCCCCTGCTCGGGC 449152 |||||||||| || ||||||| Sbjct 3449905 GACGAGAACTTGTCGCCGATCTCGGGC 3449879 >seq1 Length=5014741 Score = 87.8 bits (96), Expect = 7e-12 Identities = 102/138 (74%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 349078 GAGAATCTCCTTGAGTCTGGGCATGCCCAGGGTCACGTTCTTGGCCGCGACGCCGGCAAA 349137 |||||| |||||||||| |||| ||||| ||||||||||| | || || || ||||| Sbjct 41273 GAGAATTTCCTTGAGTCGCGGCACACCCAGCGTCACGTTCTTCGACGACACACCAGCAAA 41214 Query 349138 GTGGAAGGTCTGGAGGGTCAACTGCGTGAGGGGCTCGCCGATGCACTGGCCCGCGAGGAT 349197 ||||| || | || |||| |||||| ||||| || || |||| |||| | | Sbjct 41213 ATGGAACGTGTTCAGCGTCATCTGCGTCGCAGGCTCACCAATCGACTGCGCCGCCAACAC 41154 Query 349198 GCCTACCATCTCGCCGGG 349215 || ||||||||||| || Sbjct 41153 ACCCACCATCTCGCCCGG 41136 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2084738488582748