Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raffaelea_20quercus- mongolicae_20[genbank_20GCA_5F002215975.1_202017-07-07] 43 sequences; 27,005,990 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq38 702 0.0 >seq38 Length=4042462 Score = 702 bits (778), Expect = 0.0 Identities = 562/672 (84%), Gaps = 9/672 (1%) Strand=Plus/Plus Query 14 GCCTAGCCG-TGTGAAGCTCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATG 72 |||||||| |||||||||||||||||||||||||| |||||||||||| |||||||||| Sbjct 477402 GCCTAGCCTCTGTGAAGCTCCTTCGACGAGTCGAGTAGTTTGGGAATGCTGCTCTAAATG 477461 Query 73 GGAGGTAAATTTCTTCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGT 132 |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 477462 GGAGGTAAATTTCTTCTAAAGCTAAATACCGGCCAGAGACCGATAGCGCACAAGTAGAGT 477521 Query 133 GATCGAAAGATGAAAAGCACTTTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAG 192 |||||||||||||||||||||||| |||||| || ||| || |||||||||||||||||| Sbjct 477522 GATCGAAAGATGAAAAGCACTTTGAAAAGAGGGTCAAACAGTACGTGAAATTGTTGAAAG 477581 Query 193 GGAAGCGCTTGCAACCAGACTTGCCCGCAGTTGCTCAACCGGC-CCCTCGGCCGGTGCAC 251 |||||||| | |||||||||| | | | ||||| ||||| ||| ||||| |||| Sbjct 477582 GGAAGCGCCCGTGGCCAGACTTGCGCCCCGCGGCTCACCCGGCGGACTCCGCCGGGGCAC 477641 Query 252 TCTTCTGCGGTCAGGCCAGCATCAGCTCGGGCGGTCGGATAAAGGCCCCGGGAATGTGGC 311 | | | | |||||||||||| |||| | | ||| || | | |||||| ||||| Sbjct 477642 GCCGCGGGGTGCAGGCCAGCATCGGCTCTTCCAGGGGGACAAGGACGGCGGGAACGTGGC 477701 Query 312 CCCCTTCGGGGGGTGTTATAGCCCGGGGTGGAATGCGGCCCGCCTGGACTGAGGTCCGCG 371 || || ||| ||||||||||||| | | |||| || | || | |||| ||||| Sbjct 477702 TCC--TCCGGGAGTGTTATAGCCCGCCGCGCCATGC-CCCTGGGGGGGCCGAGGACCGCG 477758 Query 372 CTCCGGCTAGGATGCTGGCGTAATGGTTGTAAGCGGCCCGTCTTGGAACACGGACCAAGG 431 || |||| |||||||||||||||||| ||| ||||||||| |||||||||||||| Sbjct 477759 CTTCGGCAAGGATGCTGGCGTAATGGCCACCGGCGACCCGTCTTGAAACACGGACCAAGG 477818 Query 432 AGTCTAACATCTATGCGAGTGTTTGGGTGTCAAACCCGTGCGCGTAATGAAAGTGAACGG 491 |||| | ||| |||||||| |||||| |||||||| |||| |||||||||||||| Sbjct 477819 AGTCAAGCATTGGGGCGAGTGTCTGGGTGGCAAACCCGCACGCGAAATGAAAGTGAACGC 477878 Query 492 AGGTGGGAACCCGTGAGGGTGCACCATCGACCGATCCTGATGTCTTCGGATGGATTTGAG 551 ||||| || | || |||||| ||||||||||||||||| ||||||||||||||| Sbjct 477879 AGGTGAGA----GCTTCGGCGCACCACCGACCGATCCTGATGTCCTCGGATGGATTTGAG 477934 Query 552 TAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCA 611 ||||||| | | | ||||||||||||||||||||||||||||||||||||||||||| Sbjct 477935 TAAGAGCCCCACCGCTTGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCA 477994 Query 612 GAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGG 671 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 477995 GAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGACGTGCAAATCGATCGTCAAATTTGG 478054 Query 672 GTATAGGGGCGA 683 | || ||||||| Sbjct 478055 GCATGGGGGCGA 478066 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079999077650