Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raffaelea_20quercus- mongolicae_20[genbank_20GCA_5F002215975.1_202017-07-07] 43 sequences; 27,005,990 total letters Query= AAMG01002236.1 Length=287 Score E Sequences producing significant alignments: (Bits) Value seq38 248 1e-63 >seq38 Length=4042462 Score = 248 bits (274), Expect = 1e-63 Identities = 229/280 (82%), Gaps = 9/280 (3%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||| || |||||| |||||||||||||||| |||| |||| |||||| Sbjct 480152 GTACGAGAGGAACCGCTGA-TTCAGA-TAATTGGTTTTTGCGGTTGTCCGACCGGGCAGT 480209 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 ||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 480210 GCCGCGACGCTACCATCTGCTGGATAATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 480269 Query 121 GAACGGGGTGATTCTCTCCTGCACATCGTAGTCGGATACGAATAGGCTTCGGCCCCGAAC 180 ||||| || ||| | |||| |||| |||| ||||| |||||||| |||||| || | Sbjct 480270 GAACGCGGCGATAC-CTCCCGCACGCTGTAGACGGATCAGAATAGGCCTCGGCCTCGTAT 480328 Query 181 CTTAGCAGGCCGGCAACGGGCGTCCCGC-GGAAGCGCGGGGCGCTCAGCTGGCGGATTGC 239 |||||||||| | | | || | || |||| || |||| || | ||| ||||| Sbjct 480329 CTTAGCAGGC--GGTTCCGCCGCCGGGCTAGAAGTGCCCGGCGGTCTTC-CGCGTATTGC 480385 Query 240 AATTTCACCATGCGCAGGGAT-AAATCCTTTGCAGACGAC 278 ||||| | |||| ||||| |||||||||||||||||| Sbjct 480386 AATTTGGACGCGCGC-GGGATCAAATCCTTTGCAGACGAC 480424 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 819199658752