Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Raffaelea_20quercus-
mongolicae_20[genbank_20GCA_5F002215975.1_202017-07-07] 43 sequences; 27,005,990 total letters
Query= AAMG01002236.1
Length=287
Score E
Sequences producing significant alignments: (Bits) Value
seq38 248 1e-63
>seq38
Length=4042462
Score = 248 bits (274), Expect = 1e-63
Identities = 229/280 (82%), Gaps = 9/280 (3%)
Strand=Plus/Plus
Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60
|||||||||||||||| || |||||| |||||||||||||||| |||| |||| ||||||
Sbjct 480152 GTACGAGAGGAACCGCTGA-TTCAGA-TAATTGGTTTTTGCGGTTGTCCGACCGGGCAGT 480209
Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120
||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 480210 GCCGCGACGCTACCATCTGCTGGATAATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 480269
Query 121 GAACGGGGTGATTCTCTCCTGCACATCGTAGTCGGATACGAATAGGCTTCGGCCCCGAAC 180
||||| || ||| | |||| |||| |||| ||||| |||||||| |||||| || |
Sbjct 480270 GAACGCGGCGATAC-CTCCCGCACGCTGTAGACGGATCAGAATAGGCCTCGGCCTCGTAT 480328
Query 181 CTTAGCAGGCCGGCAACGGGCGTCCCGC-GGAAGCGCGGGGCGCTCAGCTGGCGGATTGC 239
|||||||||| | | | || | || |||| || |||| || | ||| |||||
Sbjct 480329 CTTAGCAGGC--GGTTCCGCCGCCGGGCTAGAAGTGCCCGGCGGTCTTC-CGCGTATTGC 480385
Query 240 AATTTCACCATGCGCAGGGAT-AAATCCTTTGCAGACGAC 278
||||| | |||| ||||| ||||||||||||||||||
Sbjct 480386 AATTTGGACGCGCGC-GGGATCAAATCCTTTGCAGACGAC 480424
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 819199658752
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |