Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raffaelea_20quercus- mongolicae_20[genbank_20GCA_5F002215975.1_202017-07-07] 43 sequences; 27,005,990 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq38 744 0.0 seq39 78.8 3e-12 >seq38 Length=4042462 Score = 744 bits (824), Expect = 0.0 Identities = 468/504 (93%), Gaps = 1/504 (0%) Strand=Plus/Minus Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 475345 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 475286 Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120 ||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 475285 CCCCGAGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTAGTAGCCGTT 475226 Query 121 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTA 180 ||||||||||| ||||||| |||| |||||| | ||||||||||||| |||| || Sbjct 475225 TCTCAGGCTCCTTCTCCGGGGTCGAGCCCTAACCCTCCGTTACCCGTTGTCACCACGGCT 475166 Query 181 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCT 240 ||||| | || || ||||||||||||||||||||||||||||||||||||||||||| Sbjct 475165 GGCCAAGACCCAGCCGTCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCG 475106 Query 241 CAAGGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGGAGCCCCGAAGGGCGTTGGT 300 ||||||| ||||||||| |||||||||||||||||| ||||||||||||||| |||| Sbjct 475105 CAAGGCCGTGCGATTCGAGCAGTTATTATGAATCACCAGGGAGCCCCGAAGGGCATTGGC 475046 Query 301 TTTTTATCTAATAAATACACCCCTTCCGAAGTCGGGGTTTTTAGCATGTATTAGCTCTAG 360 |||| |||||||||||||| ||||||||||||||||||||| |||||||||||||||||| Sbjct 475045 TTTTAATCTAATAAATACATCCCTTCCGAAGTCGGGGTTTTCAGCATGTATTAGCTCTAG 474986 Query 361 AATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGATTTAATGA 420 |||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||| Sbjct 474985 AATTACCACGGTTATCCAAGTAGTAAGGTACTATCAAATAGACGATAACTGATTTAATGA 474926 Query 421 GCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCATGGCTTAATCTTTG 480 ||||||||||||||| | ||||| |||||||||||||||||||||||||||||||||||| Sbjct 474925 GCCATTCGCAGTTTCGCGGTATA-ATTGCTTATACTTAGACATGCATGGCTTAATCTTTG 474867 Query 481 AGACAAGCATATGACTACTGGCAG 504 |||||||||||||||||||||||| Sbjct 474866 AGACAAGCATATGACTACTGGCAG 474843 >seq39 Length=779030 Score = 78.8 bits (86), Expect = 3e-12 Identities = 46/48 (96%), Gaps = 0/48 (0%) Strand=Plus/Minus Query 21 ACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCTCCCCGTGT 68 ||||||||||||| ||||||||||||||||||||||||||||||| || Sbjct 292496 ACCCAAAAGAGCCTTGTATCAGTATTTATTGTCACTACCTCCCCGAGT 292449 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1510399350528