Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ramalina_20peruviana_20[genbank_20GCA_5F001956345.1_202017-01-18] 1,657 sequences; 26,990,446 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq326 183 1e-43 >seq326 Length=7170 Score = 183 bits (202), Expect = 1e-43 Identities = 233/329 (71%), Gaps = 55/329 (17%) Strand=Plus/Minus Query 410 CGTCTTG-GAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTGTCAAACCC 468 |||||| | ||||||| |||||||||||| ||| ||||||| | || | |||||||| Sbjct 6183 CGTCTTCTGGACACGGATCAAGGAGTCTAATATCGATGCGAGGGCTTATTTATCAAACCC 6124 Query 469 GTGCGCGTAATGAAAGTGAACGGAGGTGGGAACCCGTGAGGGTGCACCATCGACCGATCC 528 | ||| ||| ||||||||||||||| ||||| | |||| ||||||| ||||||||| Sbjct 6123 ATATGCGGAATAAAAGTGAACGGAGGTAGGAACACTCAAGGGCGCACCATTGACCGATCC 6064 Query 529 TGATGTCTTCGGATGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAG---ATGGTG 585 || || | |||||||||||||||| |||||||||| ||||||||||||| | | || Sbjct 6063 GGAAGTTTACGGATGGATTTGAGTATTAGCATAGCTGCTGGGACCCGAAAGGTAAGGATG 6004 Query 586 A---------ACTATGCCTG----------------------AATAGGGTGAA----GCC 610 | | | ||||| | | |||||| ||| Sbjct 6003 ATCCTTAATCCCAAGGCCTGGAGTCTCTGCTAACATATCAACCAGATGGTGAACTATGCC 5944 Query 611 AGA----------------GGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAA 654 || |||| ||||||||||||||||||||||||||| |||||||| Sbjct 5943 TGAATCGGGTGAAGCCAGAGGAAGCTCTGGTGGAGGCTCGCAGCGGTTCTGACGTGCAAA 5884 Query 655 TCGATCGTCAAATTTGGGTATAGGGGCGA 683 ||||||||||||||||||||||||||||| Sbjct 5883 TCGATCGTCAAATTTGGGTATAGGGGCGA 5855 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079964457350