Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ramalina_20peruviana_20[genbank_20GCA_5F001956345.1_202017-01-18] 1,657 sequences; 26,990,446 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq400 257 5e-66 seq1558 84.2 7e-14 >seq400 Length=6261 Score = 257 bits (284), Expect = 5e-66 Identities = 165/180 (92%), Gaps = 0/180 (0%) Strand=Plus/Plus Query 183 CCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCTCA 242 ||| || ||||| |||||||||||||||||||||||||||||||||||||||||||| || Sbjct 1150 CCAATACCCTACAATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCGCA 1209 Query 243 AGGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGGAGCCCCGAAGGGCGTTGGTTT 302 ||||||||||||||||||||||||||||||| |||||||||||||||||||| |||| || Sbjct 1210 AGGCCATGCGATTCGTTAAGTTATTATGAATTACCAAGGAGCCCCGAAGGGCATTGGCTT 1269 Query 303 TTTATCTAATAAATACACCCCTTCCGAAGTCGGGGTTTTTAGCATGTATTAGCTCTAGAA 362 |||||| ||||||||| || ||||||| |||| || ||||| ||||||||||| |||||| Sbjct 1270 TTTATCCAATAAATACGCCTCTTCCGATGTCGAGGCTTTTACCATGTATTAGCGCTAGAA 1329 Score = 187 bits (206), Expect = 8e-45 Identities = 127/143 (89%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 2 TACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCTC 61 |||||||||||||| ||| |||| || | || ||| |||| ||||| ||||||||||||| Sbjct 856 TACTCATTCCAATTGCAAAACCCGAATGGGCTCTGCATCACTATTTCTTGTCACTACCTC 915 Query 62 CCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTT 121 || | | ||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 916 CCTGAATTAGGATTGGGTAACTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTT 975 Query 122 CTCAGGCTCCCTCTCCGGAATCG 144 |||||||||||||||||||| || Sbjct 976 CTCAGGCTCCCTCTCCGGAACCG 998 >seq1558 Length=18059 Score = 84.2 bits (92), Expect = 7e-14 Identities = 52/56 (93%), Gaps = 0/56 (0%) Strand=Plus/Minus Query 90 CCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGA 145 |||||||| |||||||||||||||||||| |||||||||| ||||||||||| ||| Sbjct 4484 CCTGCTGCGTTCCTTGGATGTGGTAGCCGGTTCTCAGGCTGCCTCTCCGGAACCGA 4429 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1510374972672