Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ramalina_20peruviana_20[genbank_20GCA_5F001956345.1_202017-01-18]
1,657 sequences; 26,990,446 total letters
Query= AAMG01002244.1
Length=504
Score E
Sequences producing significant alignments: (Bits) Value
seq400 257 5e-66
seq1558 84.2 7e-14
>seq400
Length=6261
Score = 257 bits (284), Expect = 5e-66
Identities = 165/180 (92%), Gaps = 0/180 (0%)
Strand=Plus/Plus
Query 183 CCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCTCA 242
||| || ||||| |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1150 CCAATACCCTACAATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCGCA 1209
Query 243 AGGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGGAGCCCCGAAGGGCGTTGGTTT 302
||||||||||||||||||||||||||||||| |||||||||||||||||||| |||| ||
Sbjct 1210 AGGCCATGCGATTCGTTAAGTTATTATGAATTACCAAGGAGCCCCGAAGGGCATTGGCTT 1269
Query 303 TTTATCTAATAAATACACCCCTTCCGAAGTCGGGGTTTTTAGCATGTATTAGCTCTAGAA 362
|||||| ||||||||| || ||||||| |||| || ||||| ||||||||||| ||||||
Sbjct 1270 TTTATCCAATAAATACGCCTCTTCCGATGTCGAGGCTTTTACCATGTATTAGCGCTAGAA 1329
Score = 187 bits (206), Expect = 8e-45
Identities = 127/143 (89%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 2 TACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCTC 61
|||||||||||||| ||| |||| || | || ||| |||| ||||| |||||||||||||
Sbjct 856 TACTCATTCCAATTGCAAAACCCGAATGGGCTCTGCATCACTATTTCTTGTCACTACCTC 915
Query 62 CCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTT 121
|| | | ||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 916 CCTGAATTAGGATTGGGTAACTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTT 975
Query 122 CTCAGGCTCCCTCTCCGGAATCG 144
|||||||||||||||||||| ||
Sbjct 976 CTCAGGCTCCCTCTCCGGAACCG 998
>seq1558
Length=18059
Score = 84.2 bits (92), Expect = 7e-14
Identities = 52/56 (93%), Gaps = 0/56 (0%)
Strand=Plus/Minus
Query 90 CCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGA 145
|||||||| |||||||||||||||||||| |||||||||| ||||||||||| |||
Sbjct 4484 CCTGCTGCGTTCCTTGGATGTGGTAGCCGGTTCTCAGGCTGCCTCTCCGGAACCGA 4429
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1510374972672
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |