Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ramalina_20peruviana_20[genbank_20GCA_5F001956345.1_202017-01-18] 1,657 sequences; 26,990,446 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq40 230 2e-55 seq1499 141 7e-29 >seq40 Length=17677 Score = 230 bits (254), Expect = 2e-55 Identities = 451/662 (68%), Gaps = 6/662 (1%) Strand=Plus/Plus Query 66281 AGACATGGACACTTGTGTGGACACATCAGCGACCAATCACCATCCTGTTCTACACGACGC 66340 |||| ||| || || || ||||||| | ||| ||||||| ||| || || | Sbjct 2305 AGACCCGGAGCCTCGTTAGGGCACATCAAAGTCCACTCACCATTGGCTTCGACTCGCTTC 2364 Query 66341 ATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAATG 66400 || || ||||| || ||||| ||||| |||| ||||| || || || || || || Sbjct 2365 ATGAAGAGATCCGGGATCCAAAGGGCAAAGAATAGATCTCGAGCGCGGACTTCTTCCTTG 2424 Query 66401 CCGTGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTAG 66460 |||||||| || ||||| || ||||| ||||||| ||||||||||||||| || ||||| Sbjct 2425 CCGTGATTCTTCCGCAAATCCAGGAATTCAAAGACGTCGGCATGCCATGGCTCGAGGTAC 2484 Query 66461 ATGGCGAACGAGCCCATACGTTTGCCGCCACCTTGGTCGACGTAGCGAGCGACATTGTTG 66520 |||||||| | || ||| ||| ||| ||||| ||||| ||||| ||| |||||| Sbjct 2485 ATGGCGAAAGCTCCGGGACGCTTGTTGCCTCCTTGATCGACATAGCGGGCGGTGTTGTTG 2544 Query 66521 AAGACACGCAACATCGGTACGAGCCCGTTAGATTTGCCATTGGTGCCGTCGATGGGGGAT 66580 ||||| || | ||| || || | || || || |||||||||||| |||| || Sbjct 2545 AAGACGCGTAGCATAGGAACAATGCCATTGGAGGAGCCATTGGTGCCCCCGATATACGAG 2604 Query 66581 CCTCGTGCCCGTATATCGTGAACATTCAGACCAATACCACCGGCCGTCTTCGAGATGGCA 66640 ||| || || || ||| | ||||| ||||| |||||||| |||||||||||| | Sbjct 2605 CCTGTAGCGCGAATGCGGTGGATGTTCAGGCCAATGCCACCGGCAGTCTTCGAGATGAGA 2664 Query 66641 GCACA--ATCGGCCACTGTCCGGAATATGCCGTCAATGGAGTCACCCTTGATGGTCAGGA 66698 ||||| | | |||| | | |||||||| || || |||| ||| | | Sbjct 2665 GCACACGTTTTGAGGGTGTC--GTAGATGCCGTCGATACTATCCTCCTTCATGTCGATCA 2722 Query 66699 GGTAGCATGAACTAAGTTGGGGTTTGGGTGTGGCGGCCGAGAAGAGGGTGGGTGTAGCGT 66758 | ||||||| | || || | || ||| | || ||| | ||| || | |||| Sbjct 2723 AGAAGCATGAGGACATCTGAGGCTGTGGGGTGCCAGCATTGAACAAGGTAGGGGACGCGT 2782 Query 66759 GCGTAAAGTAATGGCGAGACATGTAATTGTACGTCTCGATGACAGCATCAATGTTTTCGC 66818 | || ||||| | |||||||| || ||| ||||||||||| || ||||| ||| Sbjct 2783 GGGTGAAGTATTTCTGAGACATGAGATGGTAGGTCTCGATGACCTTGTCGATGTTGTCGT 2842 Query 66819 CATGAATCCCGAGTGC-ACATCGCATCAGGAGGTATTGAGGCCGTTCGACCAGCCGATCC 66877 | || || || | || ||| ||||| | | || || || || ||| ||| | Sbjct 2843 CGTGTATACCCACAGCGACA-CGCATAATCATGTGCTGTGGACGCTCGGCCACTTTGCCA 2901 Query 66878 TTGATATGCATTAAGTAGGAGCGTTCCAGGGTCTTGATACCAAAGTACGAGTAATTGAAA 66937 ||| | | | | ||| || || || || ||||||| |||||||| ||| ||||| Sbjct 2902 TTGGTGCGGAGGAGGTATGATCGCTCGAGAGTCTTGAACCCAAAGTATTGGTAGTTGAAG 2961 Query 66938 TC 66939 || Sbjct 2962 TC 2963 Score = 131 bits (144), Expect = 1e-25 Identities = 720/1127 (64%), Gaps = 40/1127 (4%) Strand=Plus/Plus Query 65077 ATCGACCGTGAACTGGATCGCATTAGCAGCCGCCTTGGTCCTAAGATAGTACATGCCGGT 65136 |||||| ||||||||||| | | || ||| | || | |||||||||||||| || Sbjct 1066 ATCGACGGTGAACTGGATGGGCGCCGAGGCAGCCATTGTGCGCAGATAGTACATGCCCGT 1125 Query 65137 CTTGAGGCCAGCACGCCAAGCATAGAAATGCATCGATGATAATTTTGCATAAT-TCGGCT 65195 || | ||| ||| | |||||||||||||| || | || | | | | || | Sbjct 1126 TTTCAAGCCCATCTTCCAGCCGGCGAAATGCATCGATGTTA-TCTTACCCATTGTGGGGT 1184 Query 65196 CGGCCACATGCATATTCAACGACTGACTCTGATCGATGTAACGACCACGATCTGCAGCCA 65255 | || || || ||||| ||||| |||||||| | ||| || || || |||| Sbjct 1185 CCTTCATGTGAATGTTCAAGGACTGGGATTGATCGATAAAGGCACCGCGGTCGGCGGCCA 1244 Query 65256 TGTCAATGATACGACGTCCCGAT-ATCTCCCAGACGGTCTTGTACAGGCGACGT-ACCTC 65313 | | | || | || | | | ||||||||||| |||||||| || |||| | | || Sbjct 1245 TTTGCACAATCTGGCG-CTGGCTGATCTCCCAGACCGTCTTGTAGAG-CGACTTGATGTC 1302 Query 65314 AATTGGAATCTCCTCAATGTCCTGGACTGAACCAC-GACGTGCAATAATGCGATTACGCA 65372 | || || | |||| ||||| || || | | || || || ||||| || || Sbjct 1303 AGCGGGGATGTTGGGGATGTTCTGGATGGATCCGCCGTCG-GCGATGATGCGGTTCTTCA 1361 Query 65373 TCGACTCTGACCACAAACCCAAATCGATAAGATG-TTGAAC---CAAGTGACGATTGATG 65428 | || ||||| | |||| ||||| |||| |||| | |||| |||||| | Sbjct 1362 TGTTGTCCGACCAGAGGCCCATATCGACGAGATCCTTGAGCAGCCAAG----GATTGACG 1417 Query 65429 ACTTGGAACTCGCCGGACAGTACACGACGGACATAGATGTTGGACGTGATGGGTTCAAAG 65488 || || || ||||| | || ||||||||| ||| || || || ||| ||||| ||| Sbjct 1418 ACCTGAAATTCGCCCGCTAGCACACGACGGGAATATATATTCGAGGTGTAAGGTTCGAAG 1477 Query 65489 GATTCAGTGTTGCCTAGAATTTGGGCAGTAGATGCAGTTGGCATGGGAGCGACCAACAAT 65548 ||||| ||||||| || || |||| || || || || |||||||| || || | | Sbjct 1478 CATTCATTGTTGCCGAGGATCTGGGATGTCGAGGCCGTGGGCATGGGGGCCACGAGGAGG 1537 Query 65549 GAGTTTCGCAATCCGTTCATTTCAATGTTGTGACGCAATTCGTCCCAGTTCCACATCGGT 65608 || || || | |||| | | | |||||| || | ||||||| ||| | ||| Sbjct 1538 GAATTGCGAACACCGTGCTTGGCGATGTTGGACCGGAGCGTATCCCAGTCCCAGA--GGT 1595 Query 65609 TTATCGTCGAC--ATCCACGGGCCACATATCCTGTTGCAGGGTTCCGATACTGGCCGGTG 65666 || ||| | ||| ||||||||| ||||| ||| | || | | || | Sbjct 1596 ----CG--GACGGAGTGACGCCCCACATATCTTGTTGGAGGATCCCTTGGGAGACAGGGG 1649 Query 65667 AACCGAGGAAACTATCGTACACTCCCTCCTCCTTGGCAAGTTGACA-GCTGGTCTCGAGT 65725 | || | | | ||| || || ||||| | | || | || | ||| Sbjct 1650 AGCCTTCGTAGGTGGAGTATGGGCCGAGTTCTTTGGCGATCTCGCAAGATGCGGT-GAGG 1708 Query 65726 GCGGCAAAATAAATGGTCTCGAAAATGCGTCGATTAAGTTCACGTGCCTCATCGCTCTCG 65785 |||| || ||||| || ||||| | || || | | ||| || ||| Sbjct 1709 CCGGCGTGGTAGATGGTTTCAAAAATCTGCTTGTTCAGCTGCCTTGCTTCCGGCGAGTCG 1768 Query 65786 TACGGCATACCCATCAGGACAAAAGTGTCGGCCAGACCTTGAACTCCAATACCGATGGGA 65845 ||||||| | | || || | ||||| || ||||| || |||| ||||| || Sbjct 1769 AACGGCATTCGGAGGGCGAGGAATGCATCGGCAAGTCCTTGTACCCCAAGACCGACCGGT 1828 Query 65846 CGATGACGCAAATTGGAACGTCTCGCCTCAGGTACAGGGTAGTAATTGATATCGATAATG 65905 ||||| || |||||| | | || || |||||| ||||| |||| ||||| || Sbjct 1829 CGATGGCGGAAATTGCTCCTCTTGGCTTCTTCTACAGGATAGTAGTTGACCTCGATGATT 1888 Query 65906 CGATTCAAATTGCGTGTCACCACATGCACGATACGTCGCAATTGTTCGAAATCAAAATGT 65965 |||| || | ||||||||| | || | ||| | ||| | |||| | Sbjct 1889 TTGTTCAGGTTTCTTGTCACCACCCGGGTGA--CCTCGTG-TAGTTTGG---CAAAGTCG 1942 Query 65966 TTAGGACGATCGGGAGTGCCGGACACCACAAACTTGGGAAGGGCAAGAGATGCGAGGTTG 66025 | || || | || | | | || || | || |||||||| || || || ||| Sbjct 1943 T----ACTCTCCAC-GAGCTGCAT-CTACGAAGGTTGGGAGGGCAAGGGAAGCCAGATTG 1996 Query 66026 CAGACAGCTATCTCGTCAGGAGCGGTATACTCGACAATTTCGGTGCACAGATTACTGCAG 66085 ||||| || | ||| ||||| ||||| || |||| ||| || ||||||| || || Sbjct 1997 CAGACTGCAACCTCATCAGGCGCGGTGTATTCGATAATCTCCGTGCACAAGTTGGAGCTA 2056 Query 66086 CGTATGGTGCCCAAATTCTGTTGATTACTCTTGCGATTGCATGCATCCTTGTACATCATG 66145 || ||||| |||| |||| || || |||||||| ||| ||||||||||| | |||| Sbjct 2057 CGGATGGTACCCAGGTTCTTCTGGTTGCTCTTGCGGTTGGCGGCATCCTTGTATAGCATG 2116 Query 66146 TACGGAGTGCCGGTCTCAACTTGGGACTCAATGATGGCGTGCCAAAG 66192 |||| |||| ||||| || | ||| | ||||| || ||| || Sbjct 2117 AACGGGTTGCCAGTCTCGGTCTGAGCCTCTAGGATGGAGTACCATAG 2163 >seq1499 Length=34637 Score = 141 bits (156), Expect = 7e-29 Identities = 304/449 (68%), Gaps = 9/449 (2%) Strand=Plus/Minus Query 61487 AACGATTGCTGGCATTTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAA 61546 ||||| | | || ||||| | |||||||| | || ||| ||| || ||||| | Sbjct 6134 AACGACTTGTCGCTTTTGCTGCAGTCGAGGGCATCTTCTTCTCTGGCTCATTTGCATCGG 6075 Query 61547 TCTTTTGGTTGAAGAAACGTGGACTTATGCCCGGTCTGACCTTCAGCAATGAGTTGATAT 61606 |||| ||| ||||||| ||||| || ||||||||||||||||| ||| || | || | Sbjct 6074 TCTTCTGGCTGAAGAAGCGTGGTCTGATGCCCGGTCTGACCTTTTCCAACGAACTCATCT 6015 Query 61607 CACGCGACGAGGGCATGCATTGTGATTTTGCTGTTTTGCTATTCAAACGCTATCTGGTGA 61666 | || || ||||| ||||| ||| |||||| | | || ||| || | || | Sbjct 6014 CGCGGGATGAGGGAATGCACACTGACTTTGCTTGTCTCCTGTTCTCAC---ACCTAAAGC 5958 Query 61667 ATCGTCC--GTCGGAGGAGCGTGTGGGTGAGATTGTTCGTGAGGCGGTAACTATCGAACA 61724 | || || ||| | | |||| | || | | || || || | ||||| || Sbjct 5957 ACCGCCCCAGTCCGCAGGCCGTGCAG--GACGTCATCACCGAAGCTGTCAGCATCGAGCA 5900 Query 61725 GGAATTTCTGACTGACGCTTTGCCCGTCTCACTCATCGGCATGAATTGTGGACTAATGTC 61784 ||||||| |||| || ||||| ||| || | |||||||| || ||| Sbjct 5899 GGAATTTTTGACGGAGGCTTTACCCTGTGGTCTATTGGGCATGAACGCAAACCTCATGAA 5840 Query 61785 GCAGTATATTGAATTTGTTGCCGACCGTCTGTTGGTCGATTTGGGT-ATGAAGCGGATCT 61843 ||| || || ||||| || |||||||| ||| || ||| |||||| || || | || | Sbjct 5839 GCAATACATCGAATTCGTGGCCGACCGACTGCTGCTCGCCTTGGGTAATCAAAAGTAT-T 5781 Query 61844 ATAATACGAAAAACCCATTTGATTTCATGGACATGATTTCGCTGGATGGCAAGACGAATT 61903 | || ||| || || ||||| |||||||| || || |||| |||||||| |||| Sbjct 5780 ACAAAGCGACGAATCCGTTTGACTTCATGGAGTCCATCTCTCTGGCGGGCAAGACCAATT 5721 Query 61904 TTTTCGAGAAACGTGTAGGCGACTATCAA 61932 | || |||||||| || || || |||||| Sbjct 5720 TCTTTGAGAAACGCGTTGGTGATTATCAA 5692 Score = 107 bits (118), Expect = 2e-18 Identities = 202/296 (68%), Gaps = 5/296 (2%) Strand=Plus/Minus Query 61087 ATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTG 61146 || |||| |||||||| ||||| || || ||||||||||| | || ||| | || | Sbjct 6592 ATATGGCAGATGTACAAGAAGGCCGAGGCCTCCTTCTGGACTGCAGAAGAGATTGACCTC 6533 Query 61147 TCCAAAGACATGAATGACTGGGAGCGT----TTATCGAGCGGTGAACAACATTTCATTAA 61202 ||||| ||| | | |||||| | | | ||| || ||| | | ||||| Sbjct 6532 TCCAAGGACCTTCACGACTGGAACAACAGACTCAACGA-CGATGAGCGTTACTTCATCTC 6474 Query 61203 ACATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACG 61262 || || ||||| ||||| ||||| || || || || ||||| ||||| | | || || Sbjct 6473 GCACGTCTTGGCATTCTTCGCCGCATCTGATGGCATTGTCAACGAGAACCTCGTTGAGCG 6414 Query 61263 TTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCAT 61322 ||| ||||||||| | | ||||| || || |||||||||||||| || || Sbjct 6413 CTTCAGTGGTGAGGTGCAAATCCCCGAGGCTCGCTGCTTCTACGGCTTCCAAATCATGAT 6354 Query 61323 GGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGC 61378 |||||| | || || || | ||| |||| ||||| || ||||||| ||||| Sbjct 6353 GGAGAACATTCATTCRGAAACATACTCGCTTCTGATCGACACCTACATCAAGGAGC 6298 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397559971238480