Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Reticulascus_20tulasneorum_20[genbank_20GCA_5F001557495.1_202016-02- 10] 75 sequences; 42,602,674 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq16 320 1e-82 seq4 154 1e-32 >seq16 Length=1288267 Score = 320 bits (354), Expect = 1e-82 Identities = 563/814 (69%), Gaps = 6/814 (1%) Strand=Plus/Plus Query 65991 CCACAAACTTGGGAAGGGCAAGAGATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGG 66050 ||||||| || | ||| || || || | ||||||||| || | ||| || || ||| Sbjct 164664 CCACAAAGGACGGCAAGGCCAGCGAAGCCAAGTTGCAGACGGCGACCTCATCGGGGGCGC 164723 Query 66051 TATACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGAT 66110 ||||||| || || ||||| ||||| || ||| |||||||| | ||||| || | Sbjct 164724 AGTACTCGATGATCTCCGTGCAGAGATTGGAGCTGCGGATGGTGCCAAGATTCTTCTGGT 164783 Query 66111 TACTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTGGG 66170 | |||||||||||||| ||||| ||||| | |||| | || | ||||| ||| |||| Sbjct 164784 TGCTCTTGCGATTGCAAGCATCTTTGTAGAGCATGAAAGGGTTTCCGGTTTCAGTCTGGG 164843 Query 66171 ACTCAATGATGGCGTGCCAAAGAGCGCGTGCCTTCACCGTACGTACCGCCCTACCTTTGC 66230 ||| | |||||| | |||||| ||||||| | || | | | |||| | || Sbjct 164844 CCTCTAGGATGGCATACCAAAGCTTCTGTGCCTTGATGGT-CTTGCGACCCTTGTTGAGC 164902 Query 66231 GT-TCGTAATGTTCGTAGAGGTGTTCGAAGGATTCACCCCATACTTCGGACAGACATGGA 66289 | || || | ||||||||| ||||| ||||| | || | ||| | ||| Sbjct 164903 TTCTCATACTTTTCGTAGAGAGCCTCGAACTCGTCACCGTAGCAGTCAGCCAGGCCGGGA 164962 Query 66290 CACTTGTGTGGACACATCAGCGACCAATCACCATCCTGTTCTACACGACGCATAAATAGA 66349 || | || ||||||||||| | |||||| || | || ||| ||||| ||| || ||| Sbjct 164963 CATTCGTTGGGACACATCAGAGTCCAATCGCCGTTCTTTTCAACACGCTTCATGAAGAGA 165022 Query 66350 TCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAATGCCGTGATTT 66409 ||||| ||||| |||||| ||||||||| ||||| || || || |||| || || Sbjct 165023 TCAGGAATCCACAGGGCGAGGAAGAGATCACGTGCGCGAACTTCTTCCTTGCCATGGTTC 165082 Query 66410 TTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTAGATGGCGAAC 66469 || || | ||| | |||||| || | ||| |||||||| || || |||||||| ||||| Sbjct 165083 TTTCGGAGGTCCATGAACTCGAACACGTCCGCATGCCAAGGCTCAAGGTAGATTGCGAAA 165142 Query 66470 GAGCCCATACGTTTGCCGCCACCTTGGTCGACGTAGCGAGCGACATTGTTGAAGACACGC 66529 | ||| || ||| ||||||||| || || || ||||| || |||||||| ||| Sbjct 165143 GCGCCTGGGCGCTTGTTGCCACCTTGATCCACATAACGAGCAGTGTTATTGAAGACTCGC 165202 Query 66530 AACATCGGTACGAGCCCGTTAGATTTGCCATTGGTGCCGTCGATGGGGGATCCTCGTGCC 66589 | ||| || | || ||||| || ||||||||||||| ||||| || || || Sbjct 165203 AGCATGGGAATGACACCGTTGGAAGTGCCATTGGTGCCCGCGATGTATGAACCGGTGGCA 165262 Query 66590 CGTATATCGTGAACATTCAGACCAATACCACCGGCCGTCTTCGAGATGGCAGCACA-ATC 66648 || ||| ||| | || || ||||||||||| ||| |||| ||||| ||||| || Sbjct 165263 CGGATACGGTGGATGTTGAGGCCAATACCACCAGCCATCTTGGAGATCATTGCACAGGTC 165322 Query 66649 -GGCCACTGTCCGGAATATGCCGTCAATGGAGTCACCCTTGATGGTCAGGAGGTAGCATG 66707 | |||| | | ||||| |||||| |||| |||| ||| | ||| |||||| Sbjct 165323 TTGAGGGTGTC--GTAAATGCCCTCAATGCTGTCATCCTTCATGTCGACTAGGAAGCATG 165380 Query 66708 AACTAAGTTGGGGTTTGGGTGTGGCGGCCGAGAAGAGGGTGGGTGTAGCGTGCGTAAAGT 66767 || ||||| | | || ||| | || ||||||||| || | || || || || Sbjct 165381 AAGACAGTTGAGCCTGAGGGGTGCCCGCATTGAAGAGGGTTGGCGAGGCATGTGTGAAAA 165440 Query 66768 AATGGCGAGACATGTAATTGTACGTCTCGATGAC 66801 | | || ||||| | ||||| || || ||||| Sbjct 165441 ACTTGCTGGACATCAAGTTGTAGGTTTCAATGAC 165474 >seq4 Length=2394644 Score = 154 bits (170), Expect = 1e-32 Identities = 215/297 (72%), Gaps = 7/297 (2%) Strand=Plus/Plus Query 61087 ATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTG 61146 ||||||| |||||||| ||||| ||||| ||||||||||| | |||||| | ||| || Sbjct 143044 ATTTGGCAAATGTACAAGAAGGCCGAAGCGTCCTTCTGGACCGCTGAGGAGATTGATCTG 143103 Query 61147 TCCAAAGACATGAATGACTGGGAGC----GTTTATCGAGCGGTGAACAACATTTCATTAA 61202 ||||| || | | || ||| | | | | ||| || || || | ||||| Sbjct 143104 TCCAAGGATCTTCACGATTGGAACAACAAGATCAACGA-CGACGAGAAATACTTCATCTC 143162 Query 61203 ACATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACG 61262 ||| | ||||| ||||| ||||| || || || |||||||| |||||| | | || | Sbjct 143163 ACACATTTTGGCCTTCTTCGCCGCGTCTGATGGCATCGTCAACGAGAATCTCGTCGAGAG 143222 Query 61263 TTTCGCGCAG-GAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCA 61321 ||| |||| ||||| || | | ||||| || || |||||||||||||||||| | Sbjct 143223 ATTCA-GCAGCGAGGTCCAGATCCCTGAGGCTCGCTGCTTCTACGGCTTCCAGATTATGA 143281 Query 61322 TGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGC 61378 ||||||| |||||||||||| ||| | | |||||||| || || |||| ||||| Sbjct 143282 TGGAGAACATCCACTCGGAGACATACTCTCTGCTCATCGACACATATATCAAGGAGC 143338 Score = 123 bits (136), Expect = 2e-23 Identities = 337/506 (67%), Gaps = 19/506 (4%) Strand=Plus/Plus Query 61434 GAAAGCGGATTGGGCC-TTCAATTGGATCACCAGTACAACGGCTACATTTGGTGAACGAT 61492 ||| || || |||||| ||| || |||| ||| | | | |||| || | | |||| Sbjct 143450 GAAGGCTGACTGGGCCATTCGAT-GGATTACCGACAAGAAGTCTACCTTCGCTCAACGTC 143508 Query 61493 TGCTGGCATTTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTT 61552 | | || || || | ||||| ||| | || ||||| || | ||||| | ||||| | Sbjct 143509 TTGTTGCCTTCGCTGCCGTCGAAGGTATCTTCTTCAGCGGTGCCTTTGCTTCCATCTTCT 143568 Query 61553 GGTTGAAGAAACGTGGACTTATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCG 61612 |||||||||| ||||| || ||||| ||||| || ||| ||| ||| | || || || | Sbjct 143569 GGTTGAAGAAGCGTGGCCTCATGCCAGGTCTCACATTCTCCAACGAGCTCATCTCGCGAG 143628 Query 61613 ACGAGGGCATGCATTGTGATTTTGCTGTTTTGCTATTCAAACGCTATCTGGTGAATCGTC 61672 ||||||| | ||| |||||| || | | |||||| | || || |||||| | Sbjct 143629 ACGAGGGTCTCCATACTGATTTCGCCTGTCTCCTATTCTCTCACT---TGAGGAATCGAC 143685 Query 61673 CGTCGGAGGAGCGTGTGGGTGAGATTGT--TCG-TGAGGCGGTAACTATCGAACAGGAAT 61729 | | | | | |||| || ||| ||| ||| || || | || || || || | Sbjct 143686 C-AAGCA--AACAAGTGGTCCAGGATGTTATCGTTGACGCTGTCAAAATTGAGCAAGAGT 143742 Query 61730 TTCTGACTGACGCTTTGCC----CGTCTCACTCATCGGCATGAATTGTGGACTAATGTCG 61785 | ||||| || ||| |||| |||| || | |||||||| || ||| | Sbjct 143743 TCCTGACCGAGGCTCTGCCATGTGGTCT---TC-TTGGCATGAACGCGACCCTGATGAAG 143798 Query 61786 CAGTATATTGAATTTGTTGCCGACCGTCTGTTGGTCGATTTGGGTATGAAGCGGATCTAT 61845 |||||||| || || |||||||| || || |||||| | | || | || | | ||| Sbjct 143799 CAGTATATCGAGTTCGTTGCCGATCGACTCCTGGTCGCTCTTGGCAACGAGAAGGTATAT 143858 Query 61846 AATACGAAAAACCCATTTGATTTCATGGACATGATTTCGCTGGATGGCAAGACGAATTTT 61905 || | ||||| || || |||||||| | || || || | |||||||| || || Sbjct 143859 AAGGTGTCCAACCCCTTCGACTTCATGGAGAACATCTCTCTTGGCGGCAAGACCAACTTC 143918 Query 61906 TTCGAGAAACGTGTAGGCGACTATCA 61931 |||||||| || || | ||| || || Sbjct 143919 TTCGAGAAGCGAGTCGCCGATTACCA 143944 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397567636598000