Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Reticulascus_20tulasneorum_20[genbank_20GCA_5F001557505.1_202016-02-
10] 36 sequences; 42,868,360 total letters
Query= NC_010671.1
Length=124279
Score E
Sequences producing significant alignments: (Bits) Value
seq12 320 1e-82
seq3 154 1e-32
>seq12
Length=4789767
Score = 320 bits (354), Expect = 1e-82
Identities = 563/814 (69%), Gaps = 6/814 (1%)
Strand=Plus/Plus
Query 65991 CCACAAACTTGGGAAGGGCAAGAGATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGG 66050
||||||| || | ||| || || || | ||||||||| || | ||| || || |||
Sbjct 3334898 CCACAAAGGACGGCAAGGCCAGCGAAGCCAAGTTGCAGACGGCGACCTCATCGGGGGCGC 3334957
Query 66051 TATACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGAT 66110
||||||| || || ||||| ||||| || ||| |||||||| | ||||| || |
Sbjct 3334958 AGTACTCGATGATCTCCGTGCAGAGATTGGAGCTGCGGATGGTGCCAAGATTCTTCTGGT 3335017
Query 66111 TACTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTGGG 66170
| |||||||||||||| ||||| ||||| | |||| | || | ||||| ||| ||||
Sbjct 3335018 TGCTCTTGCGATTGCAAGCATCTTTGTAGAGCATGAAAGGGTTTCCGGTTTCAGTCTGGG 3335077
Query 66171 ACTCAATGATGGCGTGCCAAAGAGCGCGTGCCTTCACCGTACGTACCGCCCTACCTTTGC 66230
||| | |||||| | |||||| ||||||| | || | | | |||| | ||
Sbjct 3335078 CCTCTAGGATGGCATACCAAAGCTTCTGTGCCTTGATGGT-CTTGCGACCCTTGTTGAGC 3335136
Query 66231 GT-TCGTAATGTTCGTAGAGGTGTTCGAAGGATTCACCCCATACTTCGGACAGACATGGA 66289
| || || | ||||||||| ||||| ||||| | || | ||| | |||
Sbjct 3335137 TTCTCATACTTTTCGTAGAGAGCCTCGAACTCGTCACCGTAGCAGTCAGCCAGGCCGGGA 3335196
Query 66290 CACTTGTGTGGACACATCAGCGACCAATCACCATCCTGTTCTACACGACGCATAAATAGA 66349
|| | || ||||||||||| | |||||| || | || ||| ||||| ||| || |||
Sbjct 3335197 CATTCGTTGGGACACATCAGAGTCCAATCGCCGTTCTTTTCAACACGCTTCATGAAGAGA 3335256
Query 66350 TCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAATGCCGTGATTT 66409
||||| ||||| |||||| ||||||||| ||||| || || || |||| || ||
Sbjct 3335257 TCAGGAATCCACAGGGCGAGGAAGAGATCACGTGCGCGAACTTCTTCCTTGCCATGGTTC 3335316
Query 66410 TTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTAGATGGCGAAC 66469
|| || | ||| | |||||| || | ||| |||||||| || || |||||||| |||||
Sbjct 3335317 TTTCGGAGGTCCATGAACTCGAACACGTCCGCATGCCAAGGCTCAAGGTAGATTGCGAAA 3335376
Query 66470 GAGCCCATACGTTTGCCGCCACCTTGGTCGACGTAGCGAGCGACATTGTTGAAGACACGC 66529
| ||| || ||| ||||||||| || || || ||||| || |||||||| |||
Sbjct 3335377 GCGCCTGGGCGCTTGTTGCCACCTTGATCCACATAACGAGCAGTGTTATTGAAGACTCGC 3335436
Query 66530 AACATCGGTACGAGCCCGTTAGATTTGCCATTGGTGCCGTCGATGGGGGATCCTCGTGCC 66589
| ||| || | || ||||| || ||||||||||||| ||||| || || ||
Sbjct 3335437 AGCATGGGAATGACACCGTTGGAAGTGCCATTGGTGCCCGCGATGTATGAACCGGTGGCA 3335496
Query 66590 CGTATATCGTGAACATTCAGACCAATACCACCGGCCGTCTTCGAGATGGCAGCACA-ATC 66648
|| ||| ||| | || || ||||||||||| ||| |||| ||||| ||||| ||
Sbjct 3335497 CGGATACGGTGGATGTTGAGGCCAATACCACCAGCCATCTTGGAGATCATTGCACAGGTC 3335556
Query 66649 -GGCCACTGTCCGGAATATGCCGTCAATGGAGTCACCCTTGATGGTCAGGAGGTAGCATG 66707
| |||| | | ||||| |||||| |||| |||| ||| | ||| ||||||
Sbjct 3335557 TTGAGGGTGTC--GTAAATGCCCTCAATGCTGTCATCCTTCATGTCGACTAGGAAGCATG 3335614
Query 66708 AACTAAGTTGGGGTTTGGGTGTGGCGGCCGAGAAGAGGGTGGGTGTAGCGTGCGTAAAGT 66767
|| ||||| | | || ||| | || ||||||||| || | || || || ||
Sbjct 3335615 AAGACAGTTGAGCCTGAGGGGTGCCCGCATTGAAGAGGGTTGGCGAGGCATGTGTGAAAA 3335674
Query 66768 AATGGCGAGACATGTAATTGTACGTCTCGATGAC 66801
| | || ||||| | ||||| || || |||||
Sbjct 3335675 ACTTGCTGGACATCAAGTTGTAGGTTTCAATGAC 3335708
>seq3
Length=2371949
Score = 154 bits (170), Expect = 1e-32
Identities = 215/297 (72%), Gaps = 7/297 (2%)
Strand=Plus/Minus
Query 61087 ATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTG 61146
||||||| |||||||| ||||| ||||| ||||||||||| | |||||| | ||| ||
Sbjct 2245942 ATTTGGCAAATGTACAAGAAGGCCGAAGCGTCCTTCTGGACCGCTGAGGAGATTGATCTG 2245883
Query 61147 TCCAAAGACATGAATGACTGGGAGC----GTTTATCGAGCGGTGAACAACATTTCATTAA 61202
||||| || | | || ||| | | | | ||| || || || | |||||
Sbjct 2245882 TCCAAGGATCTTCACGATTGGAACAACAAGATCAACGA-CGACGAGAAATACTTCATCTC 2245824
Query 61203 ACATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACG 61262
||| | ||||| ||||| ||||| || || || |||||||| |||||| | | || |
Sbjct 2245823 ACACATTTTGGCCTTCTTCGCCGCGTCTGATGGCATCGTCAACGAGAATCTCGTCGAGAG 2245764
Query 61263 TTTCGCGCAG-GAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCA 61321
||| |||| ||||| || | | ||||| || || |||||||||||||||||| |
Sbjct 2245763 ATTCA-GCAGCGAGGTCCAGATCCCTGAGGCTCGCTGCTTCTACGGCTTCCAGATTATGA 2245705
Query 61322 TGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGC 61378
||||||| |||||||||||| ||| | | |||||||| || || |||| |||||
Sbjct 2245704 TGGAGAACATCCACTCGGAGACATACTCTCTGCTCATCGACACATATATCAAGGAGC 2245648
Score = 123 bits (136), Expect = 2e-23
Identities = 337/506 (67%), Gaps = 19/506 (4%)
Strand=Plus/Minus
Query 61434 GAAAGCGGATTGGGCC-TTCAATTGGATCACCAGTACAACGGCTACATTTGGTGAACGAT 61492
||| || || |||||| ||| || |||| ||| | | | |||| || | | ||||
Sbjct 2245536 GAAGGCTGACTGGGCCATTCGAT-GGATTACCGACAAGAAGTCTACCTTCGCTCAACGTC 2245478
Query 61493 TGCTGGCATTTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTT 61552
| | || || || | ||||| ||| | || ||||| || | ||||| | ||||| |
Sbjct 2245477 TTGTTGCCTTCGCTGCCGTCGAAGGTATCTTCTTCAGCGGTGCCTTTGCTTCCATCTTCT 2245418
Query 61553 GGTTGAAGAAACGTGGACTTATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCG 61612
|||||||||| ||||| || ||||| ||||| || ||| ||| ||| | || || || |
Sbjct 2245417 GGTTGAAGAAGCGTGGCCTCATGCCAGGTCTCACATTCTCCAACGAGCTCATCTCGCGAG 2245358
Query 61613 ACGAGGGCATGCATTGTGATTTTGCTGTTTTGCTATTCAAACGCTATCTGGTGAATCGTC 61672
||||||| | ||| |||||| || | | |||||| | || || |||||| |
Sbjct 2245357 ACGAGGGTCTCCATACTGATTTCGCCTGTCTCCTATTCTCTCACT---TGAGGAATCGAC 2245301
Query 61673 CGTCGGAGGAGCGTGTGGGTGAGATTGT--TCG-TGAGGCGGTAACTATCGAACAGGAAT 61729
| | | | | |||| || ||| ||| ||| || || | || || || || |
Sbjct 2245300 C-AAGCA--AACAAGTGGTCCAGGATGTTATCGTTGACGCTGTCAAAATTGAGCAAGAGT 2245244
Query 61730 TTCTGACTGACGCTTTGCC----CGTCTCACTCATCGGCATGAATTGTGGACTAATGTCG 61785
| ||||| || ||| |||| |||| || | |||||||| || ||| |
Sbjct 2245243 TCCTGACCGAGGCTCTGCCATGTGGTCT---TC-TTGGCATGAACGCGACCCTGATGAAG 2245188
Query 61786 CAGTATATTGAATTTGTTGCCGACCGTCTGTTGGTCGATTTGGGTATGAAGCGGATCTAT 61845
|||||||| || || |||||||| || || |||||| | | || | || | | |||
Sbjct 2245187 CAGTATATCGAGTTCGTTGCCGATCGACTCCTGGTCGCTCTTGGCAACGAGAAGGTATAT 2245128
Query 61846 AATACGAAAAACCCATTTGATTTCATGGACATGATTTCGCTGGATGGCAAGACGAATTTT 61905
|| | ||||| || || |||||||| | || || || | |||||||| || ||
Sbjct 2245127 AAGGTGTCCAACCCCTTCGACTTCATGGAGAACATCTCTCTTGGCGGCAAGACCAACTTC 2245068
Query 61906 TTCGAGAAACGTGTAGGCGACTATCA 61931
|||||||| || || | ||| || ||
Sbjct 2245067 TTCGAGAAGCGAGTCGCCGATTACCA 2245042
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 397567825567040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |