Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Reticulascus_20tulasneorum_20[genbank_20GCA_5F001557505.1_202016-02- 10] 36 sequences; 42,868,360 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq12 320 1e-82 seq3 154 1e-32 >seq12 Length=4789767 Score = 320 bits (354), Expect = 1e-82 Identities = 563/814 (69%), Gaps = 6/814 (1%) Strand=Plus/Plus Query 65991 CCACAAACTTGGGAAGGGCAAGAGATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGG 66050 ||||||| || | ||| || || || | ||||||||| || | ||| || || ||| Sbjct 3334898 CCACAAAGGACGGCAAGGCCAGCGAAGCCAAGTTGCAGACGGCGACCTCATCGGGGGCGC 3334957 Query 66051 TATACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGAT 66110 ||||||| || || ||||| ||||| || ||| |||||||| | ||||| || | Sbjct 3334958 AGTACTCGATGATCTCCGTGCAGAGATTGGAGCTGCGGATGGTGCCAAGATTCTTCTGGT 3335017 Query 66111 TACTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTGGG 66170 | |||||||||||||| ||||| ||||| | |||| | || | ||||| ||| |||| Sbjct 3335018 TGCTCTTGCGATTGCAAGCATCTTTGTAGAGCATGAAAGGGTTTCCGGTTTCAGTCTGGG 3335077 Query 66171 ACTCAATGATGGCGTGCCAAAGAGCGCGTGCCTTCACCGTACGTACCGCCCTACCTTTGC 66230 ||| | |||||| | |||||| ||||||| | || | | | |||| | || Sbjct 3335078 CCTCTAGGATGGCATACCAAAGCTTCTGTGCCTTGATGGT-CTTGCGACCCTTGTTGAGC 3335136 Query 66231 GT-TCGTAATGTTCGTAGAGGTGTTCGAAGGATTCACCCCATACTTCGGACAGACATGGA 66289 | || || | ||||||||| ||||| ||||| | || | ||| | ||| Sbjct 3335137 TTCTCATACTTTTCGTAGAGAGCCTCGAACTCGTCACCGTAGCAGTCAGCCAGGCCGGGA 3335196 Query 66290 CACTTGTGTGGACACATCAGCGACCAATCACCATCCTGTTCTACACGACGCATAAATAGA 66349 || | || ||||||||||| | |||||| || | || ||| ||||| ||| || ||| Sbjct 3335197 CATTCGTTGGGACACATCAGAGTCCAATCGCCGTTCTTTTCAACACGCTTCATGAAGAGA 3335256 Query 66350 TCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAATGCCGTGATTT 66409 ||||| ||||| |||||| ||||||||| ||||| || || || |||| || || Sbjct 3335257 TCAGGAATCCACAGGGCGAGGAAGAGATCACGTGCGCGAACTTCTTCCTTGCCATGGTTC 3335316 Query 66410 TTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTAGATGGCGAAC 66469 || || | ||| | |||||| || | ||| |||||||| || || |||||||| ||||| Sbjct 3335317 TTTCGGAGGTCCATGAACTCGAACACGTCCGCATGCCAAGGCTCAAGGTAGATTGCGAAA 3335376 Query 66470 GAGCCCATACGTTTGCCGCCACCTTGGTCGACGTAGCGAGCGACATTGTTGAAGACACGC 66529 | ||| || ||| ||||||||| || || || ||||| || |||||||| ||| Sbjct 3335377 GCGCCTGGGCGCTTGTTGCCACCTTGATCCACATAACGAGCAGTGTTATTGAAGACTCGC 3335436 Query 66530 AACATCGGTACGAGCCCGTTAGATTTGCCATTGGTGCCGTCGATGGGGGATCCTCGTGCC 66589 | ||| || | || ||||| || ||||||||||||| ||||| || || || Sbjct 3335437 AGCATGGGAATGACACCGTTGGAAGTGCCATTGGTGCCCGCGATGTATGAACCGGTGGCA 3335496 Query 66590 CGTATATCGTGAACATTCAGACCAATACCACCGGCCGTCTTCGAGATGGCAGCACA-ATC 66648 || ||| ||| | || || ||||||||||| ||| |||| ||||| ||||| || Sbjct 3335497 CGGATACGGTGGATGTTGAGGCCAATACCACCAGCCATCTTGGAGATCATTGCACAGGTC 3335556 Query 66649 -GGCCACTGTCCGGAATATGCCGTCAATGGAGTCACCCTTGATGGTCAGGAGGTAGCATG 66707 | |||| | | ||||| |||||| |||| |||| ||| | ||| |||||| Sbjct 3335557 TTGAGGGTGTC--GTAAATGCCCTCAATGCTGTCATCCTTCATGTCGACTAGGAAGCATG 3335614 Query 66708 AACTAAGTTGGGGTTTGGGTGTGGCGGCCGAGAAGAGGGTGGGTGTAGCGTGCGTAAAGT 66767 || ||||| | | || ||| | || ||||||||| || | || || || || Sbjct 3335615 AAGACAGTTGAGCCTGAGGGGTGCCCGCATTGAAGAGGGTTGGCGAGGCATGTGTGAAAA 3335674 Query 66768 AATGGCGAGACATGTAATTGTACGTCTCGATGAC 66801 | | || ||||| | ||||| || || ||||| Sbjct 3335675 ACTTGCTGGACATCAAGTTGTAGGTTTCAATGAC 3335708 >seq3 Length=2371949 Score = 154 bits (170), Expect = 1e-32 Identities = 215/297 (72%), Gaps = 7/297 (2%) Strand=Plus/Minus Query 61087 ATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTG 61146 ||||||| |||||||| ||||| ||||| ||||||||||| | |||||| | ||| || Sbjct 2245942 ATTTGGCAAATGTACAAGAAGGCCGAAGCGTCCTTCTGGACCGCTGAGGAGATTGATCTG 2245883 Query 61147 TCCAAAGACATGAATGACTGGGAGC----GTTTATCGAGCGGTGAACAACATTTCATTAA 61202 ||||| || | | || ||| | | | | ||| || || || | ||||| Sbjct 2245882 TCCAAGGATCTTCACGATTGGAACAACAAGATCAACGA-CGACGAGAAATACTTCATCTC 2245824 Query 61203 ACATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACG 61262 ||| | ||||| ||||| ||||| || || || |||||||| |||||| | | || | Sbjct 2245823 ACACATTTTGGCCTTCTTCGCCGCGTCTGATGGCATCGTCAACGAGAATCTCGTCGAGAG 2245764 Query 61263 TTTCGCGCAG-GAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCA 61321 ||| |||| ||||| || | | ||||| || || |||||||||||||||||| | Sbjct 2245763 ATTCA-GCAGCGAGGTCCAGATCCCTGAGGCTCGCTGCTTCTACGGCTTCCAGATTATGA 2245705 Query 61322 TGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGC 61378 ||||||| |||||||||||| ||| | | |||||||| || || |||| ||||| Sbjct 2245704 TGGAGAACATCCACTCGGAGACATACTCTCTGCTCATCGACACATATATCAAGGAGC 2245648 Score = 123 bits (136), Expect = 2e-23 Identities = 337/506 (67%), Gaps = 19/506 (4%) Strand=Plus/Minus Query 61434 GAAAGCGGATTGGGCC-TTCAATTGGATCACCAGTACAACGGCTACATTTGGTGAACGAT 61492 ||| || || |||||| ||| || |||| ||| | | | |||| || | | |||| Sbjct 2245536 GAAGGCTGACTGGGCCATTCGAT-GGATTACCGACAAGAAGTCTACCTTCGCTCAACGTC 2245478 Query 61493 TGCTGGCATTTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTT 61552 | | || || || | ||||| ||| | || ||||| || | ||||| | ||||| | Sbjct 2245477 TTGTTGCCTTCGCTGCCGTCGAAGGTATCTTCTTCAGCGGTGCCTTTGCTTCCATCTTCT 2245418 Query 61553 GGTTGAAGAAACGTGGACTTATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCG 61612 |||||||||| ||||| || ||||| ||||| || ||| ||| ||| | || || || | Sbjct 2245417 GGTTGAAGAAGCGTGGCCTCATGCCAGGTCTCACATTCTCCAACGAGCTCATCTCGCGAG 2245358 Query 61613 ACGAGGGCATGCATTGTGATTTTGCTGTTTTGCTATTCAAACGCTATCTGGTGAATCGTC 61672 ||||||| | ||| |||||| || | | |||||| | || || |||||| | Sbjct 2245357 ACGAGGGTCTCCATACTGATTTCGCCTGTCTCCTATTCTCTCACT---TGAGGAATCGAC 2245301 Query 61673 CGTCGGAGGAGCGTGTGGGTGAGATTGT--TCG-TGAGGCGGTAACTATCGAACAGGAAT 61729 | | | | | |||| || ||| ||| ||| || || | || || || || | Sbjct 2245300 C-AAGCA--AACAAGTGGTCCAGGATGTTATCGTTGACGCTGTCAAAATTGAGCAAGAGT 2245244 Query 61730 TTCTGACTGACGCTTTGCC----CGTCTCACTCATCGGCATGAATTGTGGACTAATGTCG 61785 | ||||| || ||| |||| |||| || | |||||||| || ||| | Sbjct 2245243 TCCTGACCGAGGCTCTGCCATGTGGTCT---TC-TTGGCATGAACGCGACCCTGATGAAG 2245188 Query 61786 CAGTATATTGAATTTGTTGCCGACCGTCTGTTGGTCGATTTGGGTATGAAGCGGATCTAT 61845 |||||||| || || |||||||| || || |||||| | | || | || | | ||| Sbjct 2245187 CAGTATATCGAGTTCGTTGCCGATCGACTCCTGGTCGCTCTTGGCAACGAGAAGGTATAT 2245128 Query 61846 AATACGAAAAACCCATTTGATTTCATGGACATGATTTCGCTGGATGGCAAGACGAATTTT 61905 || | ||||| || || |||||||| | || || || | |||||||| || || Sbjct 2245127 AAGGTGTCCAACCCCTTCGACTTCATGGAGAACATCTCTCTTGGCGGCAAGACCAACTTC 2245068 Query 61906 TTCGAGAAACGTGTAGGCGACTATCA 61931 |||||||| || || | ||| || || Sbjct 2245067 TTCGAGAAGCGAGTCGCCGATTACCA 2245042 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397567825567040