Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhynchosporium_20agropyri_20[genbank_20GCA_5F900074905.1_202016-10- 26] 508 sequences; 52,477,121 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq487 322 4e-83 >seq487 Length=114140 Score = 322 bits (356), Expect = 4e-83 Identities = 657/966 (68%), Gaps = 9/966 (1%) Strand=Plus/Minus Query 65996 AACTTGGGAAGGGCAAGAGATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGGTATAC 66055 || |||||| | |||||||| || | ||| || ||||| | ||||||||| || || Sbjct 16465 AAGTTGGGA-GAGCAAGAGAAGCCAAGTTACAAACAGCGACCTCGTCAGGTGCACAGTAT 16407 Query 66056 TCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGATTACTC 66115 || || || || ||||| ||||| || ||| ||||| || | |||| ||||||||| Sbjct 16406 TCAACGATCTCTGTGCAGAGATTGGAGCTGCGGATGGTACCAAGGTTCTTCTGATTACTC 16347 Query 66116 TTGCGATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTGGGACTCA 66175 || || ||||| ||||||||||| | |||| | || | |||||||| ||| | ||| Sbjct 16346 TTACGGTTGCAAGCATCCTTGTAGAGCATGAAAGGGTTTCCGGTCTCGGTTTGCGCCTCG 16287 Query 66176 ATGATGGCGTGCCAAAGAGCGCGTGCCTTCACCGTACGTACCGCCCTA-CCTT-TGCGTT 66233 | ||||| || |||||| | ||||| | || | | | |||| |||| ||| | Sbjct 16286 AGGATGGAGTACCAAAGCTTCTGGGCCTTGATGGT-CTTGCGACCCTTGCCTTCTGCCT- 16229 Query 66234 CGTAATGTTCGTAGAGGTGTTCGAAGGATTCACCCCATACTTCGGACAGACATGGACACT 66293 |||| | ||||| || || || ||||| | || || | |||| || |||| Sbjct 16228 CGTACTTCTCGTAAAGAGCCTCAAATTCGTCACCGTAAACATCAGCAAGACCGGGGCACT 16169 Query 66294 TGTGTGGACACATCAGCGACCAATCACCATCCTGTTCTACACGACGCATAAATAGATCAG 66353 || || |||||||| | ||| ||||| || || ||||| ||| || ||||| | Sbjct 16168 CGTTGGGGCACATCAGTGTCCATGTACCATTCTTCTCAACACGCTTCATGAAGAGATCTG 16109 Query 66354 GTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAATGCCGTGATTTTTGC 66413 | ||||| || ||||||||||||||||| || || ||||| | ||||| || || | Sbjct 16108 GAATCCATAGAGCGTAGAAGAGATCGCGAGCGCGAACTTCCTCCTTTCCGTGGTTCTTTC 16049 Query 66414 GCAAGTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTAGATGGCGAACGAGC 66473 | | || ||||||||||||| || || |||||||| || |||||||| ||||| | | Sbjct 16048 GGAGATCAAGGAACTCAAAGACATCAGCGTGCCATGGCTCGAGGTAGATCGCGAAAGCAC 15989 Query 66474 CCATACGTTTGCCGCCACCTTGGTCGACGTAGCGAGCGACATTGTTGAAGACACGCAACA 66533 | || || ||||| ||||| || || | || |||||||| || || | || Sbjct 15988 CAGGGCGCTTATTTCCACCCTGGTCAACATATCTGGCTGTGTTGTTGAAAACTCGGAGCA 15929 Query 66534 TCGGTACGAGCCCGTTAGATTTGCCATTGGTGCCGTCGATGGGGGATCCTCGTGCCCGTA 66593 | || || | ||||| || || || || ||||| | ||| | ||| || || | Sbjct 15928 TAGGAACAATACCGTTGGAGTTCCCGTTTGTGCCAGCAATGTAAGCTCCAGTGGCACGGA 15869 Query 66594 TATCGTGAACATTCAGACCAATACCACCGGCCGTCTTCGAGATGGCAGCACAA-TC-GGC 66651 | ||| ||||||||||| || || || || |||| ||||| |||||| || | Sbjct 15868 TTCTGTGGACATTCAGACCGATGCCTCCAGCATTCTTGGAGATCATGGCACAAGTCTTGA 15809 Query 66652 CACTGTCCGGAATATGCCGTCAATGGAGTCACCCTTGATGGTCAGGAGGTAGCATGAACT 66711 | | || | | || ||||| || ||| |||| ||| | | | |||||||| Sbjct 15808 GAGTATC--GTAAATACCGTCGATACTGTCCTCCTTCATGTCGATCAAGAAGCATGAAGA 15751 Query 66712 AAGTTGGGGTTTGGGTGTGGCGGCCGAGAAGAGGGTGGGTGTAGCGTGCGTAAAGTAATG 66771 ||||| | || |||||| |||| | |||||||| || | ||||| |||||||| | Sbjct 15750 GAGTTGTGCTTGTGGTGTGCCGGCGGCAAAGAGGGTTGGAGACGCGTGTGTAAAGTACTT 15691 Query 66772 GCGAGACATGTAATTGTACGTCTCGATGACAGCATCAATGTTTTCGCCATGAATCCCGAG 66831 || ||||| ||||||| |||||||| || ||||| | || || ||||| || | Sbjct 15690 GCTGGACATCAAATTGTATGTCTCGATAGCACTCTCAATATCATCCCCGTGAATACCCAC 15631 Query 66832 TGCACATCGCATCAGGAGGTATTGAGGCCGTTCGACCAGCCGATCCTTGATATGCATTAA 66891 || || ||| | | || ||| || |||||| | | | ||| || | | | | Sbjct 15630 AGCCACTCTCATGATCATGTGTTGTGGACGTTCGGCAATCTTGCCCTCGAGACGGAGAAG 15571 Query 66892 GTAGGAGCGTTCCAGGGTCTTGATACCAAAGTACGAGTAATTGAAATCGTTAGCATGCAC 66951 ||| || | || || ||||||| |||||||| ||| |||||||| | ||| || Sbjct 15570 GTATGATCTCTCAAGAGTCTTGAATCCAAAGTATTGGTAGTTGAAATCCCGATCATAGAC 15511 Query 66952 GATGGC 66957 ||||| Sbjct 15510 AATGGC 15505 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397565538557120