Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhynchosporium_20secalis_20[genbank_20GCA_5F900074895.1_202016-10- 26] 2,130 sequences; 49,411,302 total letters Query= AAMG01000636.1 Length=426 Score E Sequences producing significant alignments: (Bits) Value seq1 116 9e-24 >seq1 Length=68729 Score = 116 bits (128), Expect = 9e-24 Identities = 198/282 (70%), Gaps = 10/282 (4%) Strand=Plus/Minus Query 7 TACACTGCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCC 66 || |||| |||| ||||| ||| ||||||||||||| | | |||||||| Sbjct 9769 TAAACTGTATCTGCACAGTTATTCCAATTTCACTGAGCCAATCATTGAGACAGCTGTTGT 9710 Query 67 ATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGA 126 ||||||| ||||| |||| | | | | ||| | | ||||| ||| ||||||||||||| Sbjct 9709 ATCGTTAAATCATTCATGCAAGACCGCATTTAACGGCCAAGGTATTCCGCTACCTTAGGA 9650 Query 127 CCGTTATTGTTACGGCCGCCGTTTACCGGGGCTTCGATC-AAG---AGCTT---CGCGTT 179 || | || | || ||||||| || | ||||| ||| || ||| ||||| || Sbjct 9649 CCCTCATAGGTAAGGCCGCCATTGATCGGGGTTTCCTTCGAAGCCAAGCTTATATTAGTC 9590 Query 180 AGCTAACCCCATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACT 239 | || | | ||| |||||| ||| || ||||||| |||||| | |||| | | | Sbjct 9589 AACTTAGCAAATCCGTTAACCAGCCGACATCGGGCAGAAATCACACTCAATACTTTGATT 9530 Query 240 T-TCGTGTT--TGCAGAGTGCTGTGTTTTTAATAAACAGTCG 278 | | | || ||||||||||| |||||| | |||||||||| Sbjct 9529 TATTATCTTACTGCAGAGTGCTTTGTTTTAATTAAACAGTCG 9488 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1260773144960