Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhynchosporium_20secalis_20[genbank_20GCA_5F900074895.1_202016-10-
26] 2,130 sequences; 49,411,302 total letters
Query= NC_010671.1
Length=124279
Score E
Sequences producing significant alignments: (Bits) Value
seq1094 325 3e-84
seq868 118 8e-22
>seq1094
Length=98106
Score = 325 bits (360), Expect = 3e-84
Identities = 658/966 (68%), Gaps = 9/966 (1%)
Strand=Plus/Minus
Query 65996 AACTTGGGAAGGGCAAGAGATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGGTATAC 66055
|| |||||| | |||||||| || | ||| || ||||| | ||||||||| || ||
Sbjct 29707 AAGTTGGGA-GAGCAAGAGAAGCCAAGTTACAAACAGCGACCTCGTCAGGTGCACAGTAT 29649
Query 66056 TCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGATTACTC 66115
|| || || || ||||| ||||| || ||| ||||| || | |||| |||||||||
Sbjct 29648 TCAACTATCTCTGTGCAGAGATTGGAGCTGCGGATGGTACCAAGGTTCTTCTGATTACTC 29589
Query 66116 TTGCGATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTGGGACTCA 66175
|| || ||||| ||||||||||| | |||| | || | |||||||| ||| | |||
Sbjct 29588 TTTCGGTTGCAAGCATCCTTGTAGAGCATGAAAGGGTTTCCGGTCTCGGTTTGCGCCTCG 29529
Query 66176 ATGATGGCGTGCCAAAGAGCGCGTGCCTTCACCGTACGTACCGCCCTA-CCTT-TGCGTT 66233
| ||||| || |||||| | ||||| | || | | | |||| |||| ||| |
Sbjct 29528 AGGATGGAGTACCAAAGCTTCTGGGCCTTGATGGT-CTTGCGACCCTTGCCTTCTGCCT- 29471
Query 66234 CGTAATGTTCGTAGAGGTGTTCGAAGGATTCACCCCATACTTCGGACAGACATGGACACT 66293
|||| | || ||||| || || ||||| | || || | |||| || ||||
Sbjct 29470 CGTACTTCTCATAGAGAGCCTCAAATTCGTCACCGTAAACATCAGCAAGACCGGGGCACT 29411
Query 66294 TGTGTGGACACATCAGCGACCAATCACCATCCTGTTCTACACGACGCATAAATAGATCAG 66353
|| || |||||||| | ||| ||||| || || ||||| ||| || ||||| |
Sbjct 29410 CGTTGGGGCACATCAGTGTCCATGTACCATTCTTCTCAACACGCTTCATGAAGAGATCTG 29351
Query 66354 GTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAATGCCGTGATTTTTGC 66413
| ||||| || ||||||||||||||||| || || ||||| | ||||| || || |
Sbjct 29350 GAATCCATAGAGCGTAGAAGAGATCGCGAGCGCGAACTTCCTCCTTTCCGTGGTTCTTTC 29291
Query 66414 GCAAGTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTAGATGGCGAACGAGC 66473
| || ||||||||||||| || || |||||||| || |||||||| ||||| | |
Sbjct 29290 TGAGATCAAGGAACTCAAAGACATCAGCGTGCCATGGCTCGAGGTAGATCGCGAAAGCAC 29231
Query 66474 CCATACGTTTGCCGCCACCTTGGTCGACGTAGCGAGCGACATTGTTGAAGACACGCAACA 66533
| || || ||||| ||||| || || | || |||||||| || || | ||
Sbjct 29230 CAGGGCGCTTATTTCCACCCTGGTCAACATATCTGGCTGTGTTGTTGAAAACTCGGAGCA 29171
Query 66534 TCGGTACGAGCCCGTTAGATTTGCCATTGGTGCCGTCGATGGGGGATCCTCGTGCCCGTA 66593
| || || | ||||| || || || || ||||| | ||| | ||| || || |
Sbjct 29170 TAGGAACAATACCGTTGGAGTTCCCGTTTGTGCCAGCAATGTAAGCTCCAGTGGCACGGA 29111
Query 66594 TATCGTGAACATTCAGACCAATACCACCGGCCGTCTTCGAGATGGCAGCACAA-TC-GGC 66651
| ||| ||||||||||| ||||| || || |||| ||||| |||||| || |
Sbjct 29110 TTCTGTGGACATTCAGACCGATACCTCCAGCATTCTTGGAGATCATGGCACAAGTCTTGA 29051
Query 66652 CACTGTCCGGAATATGCCGTCAATGGAGTCACCCTTGATGGTCAGGAGGTAGCATGAACT 66711
| | || | | || ||||| || ||| |||| ||| | | | ||||||||
Sbjct 29050 GAGTATC--GTAAATACCGTCGATACTGTCCTCCTTCATGTCGATCAAGAAGCATGAAGA 28993
Query 66712 AAGTTGGGGTTTGGGTGTGGCGGCCGAGAAGAGGGTGGGTGTAGCGTGCGTAAAGTAATG 66771
||||| | || |||||| |||| | |||||||| || | ||||| |||||||| |
Sbjct 28992 GAGTTGTGCTTGTGGTGTGCCGGCGGCAAAGAGGGTTGGAGACGCGTGTGTAAAGTACTT 28933
Query 66772 GCGAGACATGTAATTGTACGTCTCGATGACAGCATCAATGTTTTCGCCATGAATCCCGAG 66831
|| ||||| ||||||| |||||||| || ||||| | || || ||||| ||||
Sbjct 28932 GCTGGACATCAAATTGTATGTCTCGATAGCACTCTCAATATCATCCCCGTGAATACCGAC 28873
Query 66832 TGCACATCGCATCAGGAGGTATTGAGGCCGTTCGACCAGCCGATCCTTGATATGCATTAA 66891
|| || ||| | | || ||| || |||||| | | | ||| || | | | |
Sbjct 28872 AGCCACTCTCATGATCATGTGTTGTGGACGTTCGGCAATCTTGCCCTCGAGACGGAGAAG 28813
Query 66892 GTAGGAGCGTTCCAGGGTCTTGATACCAAAGTACGAGTAATTGAAATCGTTAGCATGCAC 66951
||| || | || || ||||||| |||||||| ||| |||||||| | ||| ||
Sbjct 28812 GTATGATCTCTCAAGAGTCTTGAATCCAAAGTATTGGTAGTTGAAATCCCGATCATAGAC 28753
Query 66952 GATGGC 66957
|||||
Sbjct 28752 AATGGC 28747
>seq868
Length=196860
Score = 118 bits (130), Expect = 8e-22
Identities = 573/908 (63%), Gaps = 74/908 (8%)
Strand=Plus/Minus
Query 61087 ATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTG 61146
|| |||| |||||||| ||||| || ||||| |||||||| | || || | ||| ||
Sbjct 110898 ATCTGGCAGATGTACAAGAAGGCAGAGGCTTCATTCTGGACCGCCGAAGAAATTGATCTG 110839
Query 61147 TCCAAAGACATGAATGACTGGGA-----GCGTTTATCGAGCGGTGAACAACATTTCATTA 61201
||||| || | | |||||| | | | || || || ||| | | || |
Sbjct 110838 TCCAAGGATCTCCACGACTGGAACAACAGACTCAAT-GA-CGATGAGAGATACTTTGTCT 110781
Query 61202 AACATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAAC 61261
|| || | || ||||| || || || ||||| || || || ||||| | |||| |
Sbjct 110780 CCCACGTTCTTGCATTCTTCGCTGCATCTGACGGAATTGTTAACGAGAACCTCCTGGAGC 110721
Query 61262 GTTTC-GCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCC 61320
| ||| ||| || |||| || || | ||||| || || |||||||| ||||| ||
Sbjct 110720 GATTCAGCGGAG-AGGTCCAGGTACCTGAGGCTCGCTGCTTCTACGGGTTCCAAATCATG 110662
Query 61321 ATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGCGG 61380
|||||||| ||||||| |||| ||| |||||||||| || ||||| | ||||| |
Sbjct 110661 ATGGAGAACATCCACTCCGAGACATACTCCCTTCTCATCGACACATACATTAAGGAGCAG 110602
Query 61381 GCGGAACGTGAACGAT-TGTTCAATGCCATCGAGACGA------TACCG-GCG------- 61425
|| |||| | | || |||||||||| |||||||| | | || |||
Sbjct 110601 GCTCAACGC-ACCTATCTGTTCAATGCTATCGAGACCAGTAAGTTGCCTCGCGTCATCAG 110543
Query 61426 ----GTG--------------------------------AAGCGGAAAGCGGATTGGGCC 61449
||| ||| ||| || || ||||||
Sbjct 110542 CACAGTGCCATATTCTAACACGATCTAGTTCCCTGCATCAAGAAGAAGGCCGACTGGGCC 110483
Query 61450 TTCAATTGGATCACCAGTACAACGGCT--ACATTTGGTGAACGATTGCTGGCATTTGCGG 61507
| | |||||| || |||| | || ||||| | | | || | | || ||||| |
Sbjct 110482 GTAAGATGGATC--CAAGACAAGGACTCTACATTCGCTCAGCGTCTCGTTGCCTTTGCCG 110425
Query 61508 TGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTG 61567
|| |||||| | || ||| || || || ||| | || || ||||||||||| ||||
Sbjct 110424 CTGTTGAGGGTATCTTCTTCTCCGGTTCATTCGCCTCTATATTCTGGTTGAAGAAGCGTG 110365
Query 61568 GACTTATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGGGCATGCATT 61627
| || ||||| ||||| |||||| ||| ||| | || || || ||||| || | ||
Sbjct 110364 GTCTGATGCCAGGTCTTACCTTCTCCAACGAGCTCATCTCCCGTGACGAAGGTCTCCACA 110305
Query 61628 GTGATTTTG-CTG--TTTTGCTATTCAAACGCTATCTGGTGAATCGTCCGTCGGAGGAGC 61684
|| |||| ||| | ||| ||| | || || ||||||| || |
Sbjct 110304 CCGACTTTGCCTGCCTCTTG---TTCTCCCACT---TGAACCATCGTCCAAGCAAGCAAG 110251
Query 61685 GTGTGGGTGAGATTGTTCGTGAGGCGGTAACTATCGAACAGGAATTTCTGACTGACGCTT 61744
|| || || || ||||| || ||||| || || || ||||||| |||
Sbjct 110250 CAGTCCAAGACGTTATTACCGAGGCTGTTGAGATCGAGCAAGAGTTCTTGACTGATGCTC 110191
Query 61745 TGCCCGTCTCACTCATCGGCATGAATTGTGGACTAATGTCGCAGTATATTGAATTTGTTG 61804
| ||| | || |||||||||| || | ||| ||| || ||||| || || |
Sbjct 110190 TTCCCTGTGCTCTTCTCGGCATGAACGCTGCTTTGATGAAGCAATACATTGAGTTCGTCG 110131
Query 61805 CCGACCGTCTGTTGGTCGATTTGGGTATGAAGCGGATCTATAATACGAAAAACCCATTTG 61864
| || |||||| | ||| | | |||| || | || || | ||||||||||
Sbjct 110130 CTGATCGTCTGCTCCTCGCTCTCGGTAACGAGAAGTATTACAAGTCCGCCAACCCATTTG 110071
Query 61865 ATTTCATGGACATGATTTCGCTGGATGGCAAGACGAATTTTTTCGAGAAACGTGTAGGCG 61924
| || ||||| | || || || | || ||||| || || |||||||| ||||| | ||
Sbjct 110070 ACTTTATGGAGAACATCTCCCTTGCCGGAAAGACCAACTTCTTCGAGAAGCGTGTCGCCG 110011
Query 61925 ACTATCAA 61932
|||| |||
Sbjct 110010 ACTACCAA 110003
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 397557679383200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |