Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhynchosporium_20secalis_20[genbank_20GCA_5F900074895.1_202016-10- 26] 2,130 sequences; 49,411,302 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq1094 325 3e-84 seq868 118 8e-22 >seq1094 Length=98106 Score = 325 bits (360), Expect = 3e-84 Identities = 658/966 (68%), Gaps = 9/966 (1%) Strand=Plus/Minus Query 65996 AACTTGGGAAGGGCAAGAGATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGGTATAC 66055 || |||||| | |||||||| || | ||| || ||||| | ||||||||| || || Sbjct 29707 AAGTTGGGA-GAGCAAGAGAAGCCAAGTTACAAACAGCGACCTCGTCAGGTGCACAGTAT 29649 Query 66056 TCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGATTACTC 66115 || || || || ||||| ||||| || ||| ||||| || | |||| ||||||||| Sbjct 29648 TCAACTATCTCTGTGCAGAGATTGGAGCTGCGGATGGTACCAAGGTTCTTCTGATTACTC 29589 Query 66116 TTGCGATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTGGGACTCA 66175 || || ||||| ||||||||||| | |||| | || | |||||||| ||| | ||| Sbjct 29588 TTTCGGTTGCAAGCATCCTTGTAGAGCATGAAAGGGTTTCCGGTCTCGGTTTGCGCCTCG 29529 Query 66176 ATGATGGCGTGCCAAAGAGCGCGTGCCTTCACCGTACGTACCGCCCTA-CCTT-TGCGTT 66233 | ||||| || |||||| | ||||| | || | | | |||| |||| ||| | Sbjct 29528 AGGATGGAGTACCAAAGCTTCTGGGCCTTGATGGT-CTTGCGACCCTTGCCTTCTGCCT- 29471 Query 66234 CGTAATGTTCGTAGAGGTGTTCGAAGGATTCACCCCATACTTCGGACAGACATGGACACT 66293 |||| | || ||||| || || ||||| | || || | |||| || |||| Sbjct 29470 CGTACTTCTCATAGAGAGCCTCAAATTCGTCACCGTAAACATCAGCAAGACCGGGGCACT 29411 Query 66294 TGTGTGGACACATCAGCGACCAATCACCATCCTGTTCTACACGACGCATAAATAGATCAG 66353 || || |||||||| | ||| ||||| || || ||||| ||| || ||||| | Sbjct 29410 CGTTGGGGCACATCAGTGTCCATGTACCATTCTTCTCAACACGCTTCATGAAGAGATCTG 29351 Query 66354 GTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAATGCCGTGATTTTTGC 66413 | ||||| || ||||||||||||||||| || || ||||| | ||||| || || | Sbjct 29350 GAATCCATAGAGCGTAGAAGAGATCGCGAGCGCGAACTTCCTCCTTTCCGTGGTTCTTTC 29291 Query 66414 GCAAGTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTAGATGGCGAACGAGC 66473 | || ||||||||||||| || || |||||||| || |||||||| ||||| | | Sbjct 29290 TGAGATCAAGGAACTCAAAGACATCAGCGTGCCATGGCTCGAGGTAGATCGCGAAAGCAC 29231 Query 66474 CCATACGTTTGCCGCCACCTTGGTCGACGTAGCGAGCGACATTGTTGAAGACACGCAACA 66533 | || || ||||| ||||| || || | || |||||||| || || | || Sbjct 29230 CAGGGCGCTTATTTCCACCCTGGTCAACATATCTGGCTGTGTTGTTGAAAACTCGGAGCA 29171 Query 66534 TCGGTACGAGCCCGTTAGATTTGCCATTGGTGCCGTCGATGGGGGATCCTCGTGCCCGTA 66593 | || || | ||||| || || || || ||||| | ||| | ||| || || | Sbjct 29170 TAGGAACAATACCGTTGGAGTTCCCGTTTGTGCCAGCAATGTAAGCTCCAGTGGCACGGA 29111 Query 66594 TATCGTGAACATTCAGACCAATACCACCGGCCGTCTTCGAGATGGCAGCACAA-TC-GGC 66651 | ||| ||||||||||| ||||| || || |||| ||||| |||||| || | Sbjct 29110 TTCTGTGGACATTCAGACCGATACCTCCAGCATTCTTGGAGATCATGGCACAAGTCTTGA 29051 Query 66652 CACTGTCCGGAATATGCCGTCAATGGAGTCACCCTTGATGGTCAGGAGGTAGCATGAACT 66711 | | || | | || ||||| || ||| |||| ||| | | | |||||||| Sbjct 29050 GAGTATC--GTAAATACCGTCGATACTGTCCTCCTTCATGTCGATCAAGAAGCATGAAGA 28993 Query 66712 AAGTTGGGGTTTGGGTGTGGCGGCCGAGAAGAGGGTGGGTGTAGCGTGCGTAAAGTAATG 66771 ||||| | || |||||| |||| | |||||||| || | ||||| |||||||| | Sbjct 28992 GAGTTGTGCTTGTGGTGTGCCGGCGGCAAAGAGGGTTGGAGACGCGTGTGTAAAGTACTT 28933 Query 66772 GCGAGACATGTAATTGTACGTCTCGATGACAGCATCAATGTTTTCGCCATGAATCCCGAG 66831 || ||||| ||||||| |||||||| || ||||| | || || ||||| |||| Sbjct 28932 GCTGGACATCAAATTGTATGTCTCGATAGCACTCTCAATATCATCCCCGTGAATACCGAC 28873 Query 66832 TGCACATCGCATCAGGAGGTATTGAGGCCGTTCGACCAGCCGATCCTTGATATGCATTAA 66891 || || ||| | | || ||| || |||||| | | | ||| || | | | | Sbjct 28872 AGCCACTCTCATGATCATGTGTTGTGGACGTTCGGCAATCTTGCCCTCGAGACGGAGAAG 28813 Query 66892 GTAGGAGCGTTCCAGGGTCTTGATACCAAAGTACGAGTAATTGAAATCGTTAGCATGCAC 66951 ||| || | || || ||||||| |||||||| ||| |||||||| | ||| || Sbjct 28812 GTATGATCTCTCAAGAGTCTTGAATCCAAAGTATTGGTAGTTGAAATCCCGATCATAGAC 28753 Query 66952 GATGGC 66957 ||||| Sbjct 28752 AATGGC 28747 >seq868 Length=196860 Score = 118 bits (130), Expect = 8e-22 Identities = 573/908 (63%), Gaps = 74/908 (8%) Strand=Plus/Minus Query 61087 ATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTG 61146 || |||| |||||||| ||||| || ||||| |||||||| | || || | ||| || Sbjct 110898 ATCTGGCAGATGTACAAGAAGGCAGAGGCTTCATTCTGGACCGCCGAAGAAATTGATCTG 110839 Query 61147 TCCAAAGACATGAATGACTGGGA-----GCGTTTATCGAGCGGTGAACAACATTTCATTA 61201 ||||| || | | |||||| | | | || || || ||| | | || | Sbjct 110838 TCCAAGGATCTCCACGACTGGAACAACAGACTCAAT-GA-CGATGAGAGATACTTTGTCT 110781 Query 61202 AACATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAAC 61261 || || | || ||||| || || || ||||| || || || ||||| | |||| | Sbjct 110780 CCCACGTTCTTGCATTCTTCGCTGCATCTGACGGAATTGTTAACGAGAACCTCCTGGAGC 110721 Query 61262 GTTTC-GCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCC 61320 | ||| ||| || |||| || || | ||||| || || |||||||| ||||| || Sbjct 110720 GATTCAGCGGAG-AGGTCCAGGTACCTGAGGCTCGCTGCTTCTACGGGTTCCAAATCATG 110662 Query 61321 ATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGCGG 61380 |||||||| ||||||| |||| ||| |||||||||| || ||||| | ||||| | Sbjct 110661 ATGGAGAACATCCACTCCGAGACATACTCCCTTCTCATCGACACATACATTAAGGAGCAG 110602 Query 61381 GCGGAACGTGAACGAT-TGTTCAATGCCATCGAGACGA------TACCG-GCG------- 61425 || |||| | | || |||||||||| |||||||| | | || ||| Sbjct 110601 GCTCAACGC-ACCTATCTGTTCAATGCTATCGAGACCAGTAAGTTGCCTCGCGTCATCAG 110543 Query 61426 ----GTG--------------------------------AAGCGGAAAGCGGATTGGGCC 61449 ||| ||| ||| || || |||||| Sbjct 110542 CACAGTGCCATATTCTAACACGATCTAGTTCCCTGCATCAAGAAGAAGGCCGACTGGGCC 110483 Query 61450 TTCAATTGGATCACCAGTACAACGGCT--ACATTTGGTGAACGATTGCTGGCATTTGCGG 61507 | | |||||| || |||| | || ||||| | | | || | | || ||||| | Sbjct 110482 GTAAGATGGATC--CAAGACAAGGACTCTACATTCGCTCAGCGTCTCGTTGCCTTTGCCG 110425 Query 61508 TGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTG 61567 || |||||| | || ||| || || || ||| | || || ||||||||||| |||| Sbjct 110424 CTGTTGAGGGTATCTTCTTCTCCGGTTCATTCGCCTCTATATTCTGGTTGAAGAAGCGTG 110365 Query 61568 GACTTATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGGGCATGCATT 61627 | || ||||| ||||| |||||| ||| ||| | || || || ||||| || | || Sbjct 110364 GTCTGATGCCAGGTCTTACCTTCTCCAACGAGCTCATCTCCCGTGACGAAGGTCTCCACA 110305 Query 61628 GTGATTTTG-CTG--TTTTGCTATTCAAACGCTATCTGGTGAATCGTCCGTCGGAGGAGC 61684 || |||| ||| | ||| ||| | || || ||||||| || | Sbjct 110304 CCGACTTTGCCTGCCTCTTG---TTCTCCCACT---TGAACCATCGTCCAAGCAAGCAAG 110251 Query 61685 GTGTGGGTGAGATTGTTCGTGAGGCGGTAACTATCGAACAGGAATTTCTGACTGACGCTT 61744 || || || || ||||| || ||||| || || || ||||||| ||| Sbjct 110250 CAGTCCAAGACGTTATTACCGAGGCTGTTGAGATCGAGCAAGAGTTCTTGACTGATGCTC 110191 Query 61745 TGCCCGTCTCACTCATCGGCATGAATTGTGGACTAATGTCGCAGTATATTGAATTTGTTG 61804 | ||| | || |||||||||| || | ||| ||| || ||||| || || | Sbjct 110190 TTCCCTGTGCTCTTCTCGGCATGAACGCTGCTTTGATGAAGCAATACATTGAGTTCGTCG 110131 Query 61805 CCGACCGTCTGTTGGTCGATTTGGGTATGAAGCGGATCTATAATACGAAAAACCCATTTG 61864 | || |||||| | ||| | | |||| || | || || | |||||||||| Sbjct 110130 CTGATCGTCTGCTCCTCGCTCTCGGTAACGAGAAGTATTACAAGTCCGCCAACCCATTTG 110071 Query 61865 ATTTCATGGACATGATTTCGCTGGATGGCAAGACGAATTTTTTCGAGAAACGTGTAGGCG 61924 | || ||||| | || || || | || ||||| || || |||||||| ||||| | || Sbjct 110070 ACTTTATGGAGAACATCTCCCTTGCCGGAAAGACCAACTTCTTCGAGAAGCGTGTCGCCG 110011 Query 61925 ACTATCAA 61932 |||| ||| Sbjct 110010 ACTACCAA 110003 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397557679383200