Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rosellinia_20necatrix_20[genbank_20GCA_5F001445595.3_202017-02-01]
239 sequences; 44,257,831 total letters
Query= AAMG01000941.1
Length=299
Score E
Sequences producing significant alignments: (Bits) Value
seq42 197 2e-48
>seq42
Length=387416
Score = 197 bits (218), Expect = 2e-48
Identities = 112/114 (98%), Gaps = 0/114 (0%)
Strand=Plus/Minus
Query 93 AGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACA 152
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 170546 AGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACA 170487
Query 153 TCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTT 206
||||||||||||||||| ||||||||||||||||||||| ||||||||||||||
Sbjct 170486 TCGAAGGATCAAAAAGCGACGTCGCTATGAACGCTTGGCCGCCACAAGCCAGTT 170433
Score = 194 bits (214), Expect = 3e-47
Identities = 110/112 (98%), Gaps = 0/112 (0%)
Strand=Plus/Minus
Query 93 AGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACA 152
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 175317 AGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACA 175258
Query 153 TCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAG 204
||||||||||||||||| ||||||||||||||||||||| ||||||||||||
Sbjct 175257 TCGAAGGATCAAAAAGCGACGTCGCTATGAACGCTTGGCCGCCACAAGCCAG 175206
Score = 161 bits (178), Expect = 2e-37
Identities = 89/89 (100%), Gaps = 0/89 (0%)
Strand=Plus/Minus
Query 207 ATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGA 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 169927 ATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGA 169868
Query 267 TAGGCCACACTTTCATGGTTTGTATTCAC 295
|||||||||||||||||||||||||||||
Sbjct 169867 TAGGCCACACTTTCATGGTTTGTATTCAC 169839
Score = 140 bits (154), Expect = 6e-31
Identities = 87/92 (95%), Gaps = 1/92 (1%)
Strand=Plus/Plus
Query 1 TACTAAGCGGAATTACCATTGGGGCGACGGTCATCAGTAGGGTAAAACTAACCTGTCTCA 60
|||||||| |||||||||||| || || ||||||||||||||||||||||||||||||||
Sbjct 174844 TACTAAGCTGAATTACCATTGCGGTGA-GGTCATCAGTAGGGTAAAACTAACCTGTCTCA 174902
Query 61 TGACGGTCTAAACCCAGCTCACGTTCCCTATT 92
|||||||||||||||||||||||||||||||
Sbjct 174903 CGACGGTCTAAACCCAGCTCACGTTCCCTATT 174934
Score = 111 bits (122), Expect = 3e-22
Identities = 63/64 (98%), Gaps = 0/64 (0%)
Strand=Plus/Minus
Query 29 GGTCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCC 88
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 171009 GGTCATCAGTAGGGTAAAACTAACCTGTCTCACGACGGTCTAAACCCAGCTCACGTTCCC 170950
Query 89 TATT 92
||||
Sbjct 170949 TATT 170946
Score = 111 bits (122), Expect = 3e-22
Identities = 63/64 (98%), Gaps = 0/64 (0%)
Strand=Plus/Minus
Query 29 GGTCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCC 88
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 175780 GGTCATCAGTAGGGTAAAACTAACCTGTCTCACGACGGTCTAAACCCAGCTCACGTTCCC 175721
Query 89 TATT 92
||||
Sbjct 175720 TATT 175717
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 854397957984
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |