Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rosellinia_20necatrix_20[genbank_20GCA_5F001445595.3_202017-02-01] 239 sequences; 44,257,831 total letters Query= AAMG01002236.1 Length=287 Score E Sequences producing significant alignments: (Bits) Value seq42 244 2e-62 >seq42 Length=387416 Score = 244 bits (270), Expect = 2e-62 Identities = 227/283 (80%), Gaps = 15/283 (5%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||| || |||||| ||||||||||||||||||||| |||| |||||| Sbjct 160020 GTACGAGAGGAACCGCTGA-TTCAGA-TAATTGGTTTTTGCGGCTGTCCGACCGGGCAGT 160077 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 ||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 160078 GCCGCGACGCTACCATCTGCTGGATAATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 160137 Query 121 GAACGGGGTGATTCTCTCCTGCACATCGTAGTCGGATACGAATAGGCTTCGGCCCCGAAC 180 ||||| |||||| | |||| ||| | |||| ||||||||||||||| |||||| || | Sbjct 160138 GAACGCGGTGATAC-CTCCCACACGTTGTAGACGGATACGAATAGGCCTCGGCCTCGCAT 160196 Query 181 CTTAGCAGG-----CCGGCAACGGGCGTCCCGCGGAAGCGCGGGGCGCTCAGCTGGCGGA 235 || ||| || ||| || | | | | |||| | || | | | | ||| | Sbjct 160197 CTCAGCCGGCGATTCCGCCATCAGACTT------GAAGTGTCTGGTGGT-ATTTCGCGTA 160249 Query 236 TTGCAATTTCACCATGCGCAGGGATAAATCCTTTGCAGACGAC 278 ||| ||||| | || ||| || ||||||||||||||||||| Sbjct 160250 TTGTAATTTGAACACGCGTGGGATTAAATCCTTTGCAGACGAC 160292 Score = 244 bits (270), Expect = 2e-62 Identities = 227/283 (80%), Gaps = 15/283 (5%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||| || |||||| ||||||||||||||||||||| |||| |||||| Sbjct 174846 GTACGAGAGGAACCGCTGA-TTCAGA-TAATTGGTTTTTGCGGCTGTCCGACCGGGCAGT 174789 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 ||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 174788 GCCGCGACGCTACCATCTGCTGGATAATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 174729 Query 121 GAACGGGGTGATTCTCTCCTGCACATCGTAGTCGGATACGAATAGGCTTCGGCCCCGAAC 180 ||||| |||||| | |||| ||| | |||| ||||||||||||||| |||||| || | Sbjct 174728 GAACGCGGTGATAC-CTCCCACACGTTGTAGACGGATACGAATAGGCCTCGGCCTCGCAT 174670 Query 181 CTTAGCAGG-----CCGGCAACGGGCGTCCCGCGGAAGCGCGGGGCGCTCAGCTGGCGGA 235 || ||| || ||| || | | | | |||| | || | | | | ||| | Sbjct 174669 CTCAGCCGGCGATTCCGCCATCAGACTT------GAAGTGTCTGGTGGT-ATTTCGCGTA 174617 Query 236 TTGCAATTTCACCATGCGCAGGGATAAATCCTTTGCAGACGAC 278 ||| ||||| | || ||| || ||||||||||||||||||| Sbjct 174616 TTGTAATTTGAACACGCGTGGGATTAAATCCTTTGCAGACGAC 174574 Score = 244 bits (270), Expect = 2e-62 Identities = 227/283 (80%), Gaps = 15/283 (5%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||| || |||||| ||||||||||||||||||||| |||| |||||| Sbjct 175830 GTACGAGAGGAACCGCTGA-TTCAGA-TAATTGGTTTTTGCGGCTGTCCGACCGGGCAGT 175887 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 ||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 175888 GCCGCGACGCTACCATCTGCTGGATAATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 175947 Query 121 GAACGGGGTGATTCTCTCCTGCACATCGTAGTCGGATACGAATAGGCTTCGGCCCCGAAC 180 ||||| |||||| | |||| ||| | |||| ||||||||||||||| |||||| || | Sbjct 175948 GAACGCGGTGATAC-CTCCCACACGTTGTAGACGGATACGAATAGGCCTCGGCCTCGCAT 176006 Query 181 CTTAGCAGG-----CCGGCAACGGGCGTCCCGCGGAAGCGCGGGGCGCTCAGCTGGCGGA 235 || ||| || ||| || | | | | |||| | || | | | | ||| | Sbjct 176007 CTCAGCCGGCGATTCCGCCATCAGACTT------GAAGTGTCTGGTGGT-ATTTCGCGTA 176059 Query 236 TTGCAATTTCACCATGCGCAGGGATAAATCCTTTGCAGACGAC 278 ||| ||||| | || ||| || ||||||||||||||||||| Sbjct 176060 TTGTAATTTGAACACGCGTGGGATTAAATCCTTTGCAGACGAC 176102 Score = 244 bits (270), Expect = 2e-62 Identities = 227/283 (80%), Gaps = 15/283 (5%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||| || |||||| ||||||||||||||||||||| |||| |||||| Sbjct 176145 GTACGAGAGGAACCGCTGA-TTCAGA-TAATTGGTTTTTGCGGCTGTCCGACCGGGCAGT 176202 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 ||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 176203 GCCGCGACGCTACCATCTGCTGGATAATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 176262 Query 121 GAACGGGGTGATTCTCTCCTGCACATCGTAGTCGGATACGAATAGGCTTCGGCCCCGAAC 180 ||||| |||||| | |||| ||| | |||| ||||||||||||||| |||||| || | Sbjct 176263 GAACGCGGTGATAC-CTCCCACACGTTGTAGACGGATACGAATAGGCCTCGGCCTCGCAT 176321 Query 181 CTTAGCAGG-----CCGGCAACGGGCGTCCCGCGGAAGCGCGGGGCGCTCAGCTGGCGGA 235 || ||| || ||| || | | | | |||| | || | | | | ||| | Sbjct 176322 CTCAGCCGGCGATTCCGCCATCAGACTT------GAAGTGTCTGGTGGT-ATTTCGCGTA 176374 Query 236 TTGCAATTTCACCATGCGCAGGGATAAATCCTTTGCAGACGAC 278 ||| ||||| | || ||| || ||||||||||||||||||| Sbjct 176375 TTGTAATTTGAACACGCGTGGGATTAAATCCTTTGCAGACGAC 176417 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 819198103296