Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rosellinia_20necatrix_20[genbank_20GCA_5F001445595.3_202017-02-01]
239 sequences; 44,257,831 total letters
Query= AAMG01002236.1
Length=287
Score E
Sequences producing significant alignments: (Bits) Value
seq42 244 2e-62
>seq42
Length=387416
Score = 244 bits (270), Expect = 2e-62
Identities = 227/283 (80%), Gaps = 15/283 (5%)
Strand=Plus/Plus
Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60
|||||||||||||||| || |||||| ||||||||||||||||||||| |||| ||||||
Sbjct 160020 GTACGAGAGGAACCGCTGA-TTCAGA-TAATTGGTTTTTGCGGCTGTCCGACCGGGCAGT 160077
Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120
||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 160078 GCCGCGACGCTACCATCTGCTGGATAATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 160137
Query 121 GAACGGGGTGATTCTCTCCTGCACATCGTAGTCGGATACGAATAGGCTTCGGCCCCGAAC 180
||||| |||||| | |||| ||| | |||| ||||||||||||||| |||||| || |
Sbjct 160138 GAACGCGGTGATAC-CTCCCACACGTTGTAGACGGATACGAATAGGCCTCGGCCTCGCAT 160196
Query 181 CTTAGCAGG-----CCGGCAACGGGCGTCCCGCGGAAGCGCGGGGCGCTCAGCTGGCGGA 235
|| ||| || ||| || | | | | |||| | || | | | | ||| |
Sbjct 160197 CTCAGCCGGCGATTCCGCCATCAGACTT------GAAGTGTCTGGTGGT-ATTTCGCGTA 160249
Query 236 TTGCAATTTCACCATGCGCAGGGATAAATCCTTTGCAGACGAC 278
||| ||||| | || ||| || |||||||||||||||||||
Sbjct 160250 TTGTAATTTGAACACGCGTGGGATTAAATCCTTTGCAGACGAC 160292
Score = 244 bits (270), Expect = 2e-62
Identities = 227/283 (80%), Gaps = 15/283 (5%)
Strand=Plus/Minus
Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60
|||||||||||||||| || |||||| ||||||||||||||||||||| |||| ||||||
Sbjct 174846 GTACGAGAGGAACCGCTGA-TTCAGA-TAATTGGTTTTTGCGGCTGTCCGACCGGGCAGT 174789
Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120
||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 174788 GCCGCGACGCTACCATCTGCTGGATAATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 174729
Query 121 GAACGGGGTGATTCTCTCCTGCACATCGTAGTCGGATACGAATAGGCTTCGGCCCCGAAC 180
||||| |||||| | |||| ||| | |||| ||||||||||||||| |||||| || |
Sbjct 174728 GAACGCGGTGATAC-CTCCCACACGTTGTAGACGGATACGAATAGGCCTCGGCCTCGCAT 174670
Query 181 CTTAGCAGG-----CCGGCAACGGGCGTCCCGCGGAAGCGCGGGGCGCTCAGCTGGCGGA 235
|| ||| || ||| || | | | | |||| | || | | | | ||| |
Sbjct 174669 CTCAGCCGGCGATTCCGCCATCAGACTT------GAAGTGTCTGGTGGT-ATTTCGCGTA 174617
Query 236 TTGCAATTTCACCATGCGCAGGGATAAATCCTTTGCAGACGAC 278
||| ||||| | || ||| || |||||||||||||||||||
Sbjct 174616 TTGTAATTTGAACACGCGTGGGATTAAATCCTTTGCAGACGAC 174574
Score = 244 bits (270), Expect = 2e-62
Identities = 227/283 (80%), Gaps = 15/283 (5%)
Strand=Plus/Plus
Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60
|||||||||||||||| || |||||| ||||||||||||||||||||| |||| ||||||
Sbjct 175830 GTACGAGAGGAACCGCTGA-TTCAGA-TAATTGGTTTTTGCGGCTGTCCGACCGGGCAGT 175887
Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120
||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 175888 GCCGCGACGCTACCATCTGCTGGATAATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 175947
Query 121 GAACGGGGTGATTCTCTCCTGCACATCGTAGTCGGATACGAATAGGCTTCGGCCCCGAAC 180
||||| |||||| | |||| ||| | |||| ||||||||||||||| |||||| || |
Sbjct 175948 GAACGCGGTGATAC-CTCCCACACGTTGTAGACGGATACGAATAGGCCTCGGCCTCGCAT 176006
Query 181 CTTAGCAGG-----CCGGCAACGGGCGTCCCGCGGAAGCGCGGGGCGCTCAGCTGGCGGA 235
|| ||| || ||| || | | | | |||| | || | | | | ||| |
Sbjct 176007 CTCAGCCGGCGATTCCGCCATCAGACTT------GAAGTGTCTGGTGGT-ATTTCGCGTA 176059
Query 236 TTGCAATTTCACCATGCGCAGGGATAAATCCTTTGCAGACGAC 278
||| ||||| | || ||| || |||||||||||||||||||
Sbjct 176060 TTGTAATTTGAACACGCGTGGGATTAAATCCTTTGCAGACGAC 176102
Score = 244 bits (270), Expect = 2e-62
Identities = 227/283 (80%), Gaps = 15/283 (5%)
Strand=Plus/Plus
Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60
|||||||||||||||| || |||||| ||||||||||||||||||||| |||| ||||||
Sbjct 176145 GTACGAGAGGAACCGCTGA-TTCAGA-TAATTGGTTTTTGCGGCTGTCCGACCGGGCAGT 176202
Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120
||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 176203 GCCGCGACGCTACCATCTGCTGGATAATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 176262
Query 121 GAACGGGGTGATTCTCTCCTGCACATCGTAGTCGGATACGAATAGGCTTCGGCCCCGAAC 180
||||| |||||| | |||| ||| | |||| ||||||||||||||| |||||| || |
Sbjct 176263 GAACGCGGTGATAC-CTCCCACACGTTGTAGACGGATACGAATAGGCCTCGGCCTCGCAT 176321
Query 181 CTTAGCAGG-----CCGGCAACGGGCGTCCCGCGGAAGCGCGGGGCGCTCAGCTGGCGGA 235
|| ||| || ||| || | | | | |||| | || | | | | ||| |
Sbjct 176322 CTCAGCCGGCGATTCCGCCATCAGACTT------GAAGTGTCTGGTGGT-ATTTCGCGTA 176374
Query 236 TTGCAATTTCACCATGCGCAGGGATAAATCCTTTGCAGACGAC 278
||| ||||| | || ||| || |||||||||||||||||||
Sbjct 176375 TTGTAATTTGAACACGCGTGGGATTAAATCCTTTGCAGACGAC 176417
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 819198103296
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |