Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rutstroemia_20echinophila_20[genbank_20GCA_5F000812885.1_202014-12- 31] 7,345 sequences; 40,250,382 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq14 848 0.0 seq6745 203 1e-49 seq5583 77.0 1e-11 >seq14 Length=13360 Score = 848 bits (940), Expect = 0.0 Identities = 591/666 (89%), Gaps = 4/666 (1%) Strand=Plus/Plus Query 20 CCGTGTGAAGCTCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTA 79 || |||||| ||| ||||||||||||||||||||||||||||||||| ||||||| |||| Sbjct 255 CCATGTGAAACTCTTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTA 314 Query 80 AATTTCTTCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAA 139 ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 315 TATTTCATCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAA 374 Query 140 AGATGAAAAGCACTTTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199 ||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||| Sbjct 375 AGATGAAAAGCACTTTGGAAAGAGAGTTAAACAGTACGTGAAATTGTTGAAAGGGAAGCG 434 Query 200 CTTGCAACCAGACTTGCCCGCAGTTGCTCAACCG-GCCCCTCGGCCGGTGCACTCTTCTG 258 ||||||| ||||||||| | ||||| ||| | || || | ||||||||| | Sbjct 435 CTTGCAATCAGACTTGCGCCTAGTTGATCATCTAAGCTTCT-GTTTGGTGCACTCAATTA 493 Query 259 CGGTCAGGCCAGCATCAGCTCGGGCGGTCGGATAAAGGCCCCGGGAATGTGGCCCCCTTC 318 | ||||||||||||| | | ||| ||| ||||||||||| |||||||| ||| ||||| Sbjct 494 GGCTCAGGCCAGCATCGGTTTGGGTGGTTGGATAAAGGCCTAGGGAATGTAGCCTCCTTC 553 Query 319 GGGGGGTGTTATAGCCCGGGGTGGAATGCGGCCCGCCTGGACTGAGGTCCGCGCTCCGGC 378 ||| ||||||||||||| |||| ||||| ||| ||||||| |||| ||||||| |||| Sbjct 554 GGGTGGTGTTATAGCCCTAGGTGCAATGCAGCCTACCTGGACCGAGGACCGCGCTTCGGC 613 Query 379 TAGGATGCTGGCGTAATGGTTGTAAGCGGCCCGTCTTGGAACACGGACCAAGGAGTCTAA 438 |||||||||||||||||||||||||||| ||||||||| |||||||||||||||||| | Sbjct 614 TAGGATGCTGGCGTAATGGTTGTAAGCGACCCGTCTTGAAACACGGACCAAGGAGTCGAC 673 Query 439 C-ATCTATGCGAGTGTTTGGGTGTCAAACCCGTGCGCGTAATGAAAGTGAACGGAGGTGG 497 | || || |||||||||||||||| |||||| | ||||||||||||||||||||||||| Sbjct 674 CTATTTA-GCGAGTGTTTGGGTGTTAAACCCATACGCGTAATGAAAGTGAACGGAGGTGA 732 Query 498 GAACCCGTGAGGGTGCACCATCGACCGATCCTGATGTCTTCGGATGGATTTGAGTAAGAG 557 |||||| | |||| ||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 733 GAACCCTTTAGGGCGCATCATCGACCGATCCTGATGTCTTCGGATGGATTTGAGTAAGAG 792 Query 558 CATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAA 617 | || | | |||||||||||||||||| |||| | ||||||||||||||||||||||| Sbjct 793 CTAAGTGGGTCGGACCCGAAAGATGGTGATCTATACGTGAATAGGGTGAAGCCAGAGGAA 852 Query 618 ACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAG 677 |||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||| Sbjct 853 ACTCTGGTGGAGGCTCGCAGCGGTTCTGACGTGCAAATCGATCGTCAAATTTGCGTATAG 912 Query 678 GGGCGA 683 |||||| Sbjct 913 GGGCGA 918 Score = 95.1 bits (104), Expect = 5e-17 Identities = 69/80 (86%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 20 CCGTGTGAAGCTCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTA 79 || |||| | ||| ||| ||||||||| ||||||||||||||||||| ||||||| |||| Sbjct 13281 CCATGTGTAACTCTTTCTACGAGTCGATTTGTTTGGGAATGCAGCTCAAAATGGGTGGTA 13340 Query 80 AATTTCTTCTAAAGCTAAAT 99 ||||| |||||| |||||| Sbjct 13341 TATTTCATCTAAATCTAAAT 13360 >seq6745 Length=6402 Score = 203 bits (224), Expect = 1e-49 Identities = 171/205 (83%), Gaps = 4/205 (2%) Strand=Plus/Minus Query 409 CCGTCTTGGAACACGGACCAAGGAGTCTAAC-ATCTATGCGAGTGTTTGGGTGTCAAACC 467 |||||||| || || ||||||||||| | | || || ||||||||||||| || ||||| Sbjct 6358 CCGTCTTGAAATGCGCACCAAGGAGTCGAGCTATTTA-GCGAGTGTTTGGGCGTTAAACC 6300 Query 468 CGTGCGCGTAATGAAAGTGAACGGAGGTGGGAACCCGTGAGGGTGCACCATCGACCGATC 527 | | ||| |||||||||||||||||| || ||||| | ||| ||| |||||||||||| Sbjct 6299 CATACGCATAATGAAAGTGAACGGAGATGAGAACCGATTAGGACGCATCATCGACCGATC 6240 Query 528 CTGATGTCTTCGGATGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAA 587 |||||||||||||||| |||||||||||||| ||||| | |||| || |||||||||| Sbjct 6239 CTGATGTCTTCGGATGTATTTGAGTAAGAGCTAAGCTGGTCGGACTCG-AAGATGGTGAG 6181 Query 588 CTATGCCTGAATAGGGTGAA-GCCA 611 |||| | ||||||||| ||| |||| Sbjct 6180 CTATACGTGAATAGGGCGAATGCCA 6156 >seq5583 Length=14862 Score = 77.0 bits (84), Expect = 1e-11 Identities = 113/160 (71%), Gaps = 15/160 (9%) Strand=Plus/Minus Query 20 CCGTGTGAAGCTCCTTCGACGAGTCGAGTTGTTTGGGAATGCAG---CTCTAAATGGGAG 76 ||||||||||| |||||| || || |||| ||||||| ||| |||| ||| || Sbjct 4793 CCGTGTGAAGCCTCTTCGAGGATTCTTTTTGTGTGGGAATTCAGCTCCTCTGAATAGGTA 4734 Query 77 GTAA--------ATTTCTTCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTA 128 ||| | ||| || ||||||||||||| | ||| || |||| || |||| Sbjct 4733 ATAATATAATATAGTTCGTCGGAAGCTAAATATTGCCTAGATACTGATATTAAACTAGTA 4674 Query 129 G----AGTGATCGAAAGATGAAAAGCACTTTGGAAAGAGA 164 | ||||| |||| ||| ||||| ||||||||||||| Sbjct 4673 GGGTTGGTGATTGAAATATGGAAAGCTCTTTGGAAAGAGA 4634 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079842449750