Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rutstroemia_20echinophila_20[genbank_20GCA_5F000812885.1_202014-12-
31] 7,345 sequences; 40,250,382 total letters
Query= AAMG01000304.1
Length=683
Score E
Sequences producing significant alignments: (Bits) Value
seq14 848 0.0
seq6745 203 1e-49
seq5583 77.0 1e-11
>seq14
Length=13360
Score = 848 bits (940), Expect = 0.0
Identities = 591/666 (89%), Gaps = 4/666 (1%)
Strand=Plus/Plus
Query 20 CCGTGTGAAGCTCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTA 79
|| |||||| ||| ||||||||||||||||||||||||||||||||| ||||||| ||||
Sbjct 255 CCATGTGAAACTCTTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTA 314
Query 80 AATTTCTTCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAA 139
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 315 TATTTCATCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAA 374
Query 140 AGATGAAAAGCACTTTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199
||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct 375 AGATGAAAAGCACTTTGGAAAGAGAGTTAAACAGTACGTGAAATTGTTGAAAGGGAAGCG 434
Query 200 CTTGCAACCAGACTTGCCCGCAGTTGCTCAACCG-GCCCCTCGGCCGGTGCACTCTTCTG 258
||||||| ||||||||| | ||||| ||| | || || | ||||||||| |
Sbjct 435 CTTGCAATCAGACTTGCGCCTAGTTGATCATCTAAGCTTCT-GTTTGGTGCACTCAATTA 493
Query 259 CGGTCAGGCCAGCATCAGCTCGGGCGGTCGGATAAAGGCCCCGGGAATGTGGCCCCCTTC 318
| ||||||||||||| | | ||| ||| ||||||||||| |||||||| ||| |||||
Sbjct 494 GGCTCAGGCCAGCATCGGTTTGGGTGGTTGGATAAAGGCCTAGGGAATGTAGCCTCCTTC 553
Query 319 GGGGGGTGTTATAGCCCGGGGTGGAATGCGGCCCGCCTGGACTGAGGTCCGCGCTCCGGC 378
||| ||||||||||||| |||| ||||| ||| ||||||| |||| ||||||| ||||
Sbjct 554 GGGTGGTGTTATAGCCCTAGGTGCAATGCAGCCTACCTGGACCGAGGACCGCGCTTCGGC 613
Query 379 TAGGATGCTGGCGTAATGGTTGTAAGCGGCCCGTCTTGGAACACGGACCAAGGAGTCTAA 438
|||||||||||||||||||||||||||| ||||||||| |||||||||||||||||| |
Sbjct 614 TAGGATGCTGGCGTAATGGTTGTAAGCGACCCGTCTTGAAACACGGACCAAGGAGTCGAC 673
Query 439 C-ATCTATGCGAGTGTTTGGGTGTCAAACCCGTGCGCGTAATGAAAGTGAACGGAGGTGG 497
| || || |||||||||||||||| |||||| | |||||||||||||||||||||||||
Sbjct 674 CTATTTA-GCGAGTGTTTGGGTGTTAAACCCATACGCGTAATGAAAGTGAACGGAGGTGA 732
Query 498 GAACCCGTGAGGGTGCACCATCGACCGATCCTGATGTCTTCGGATGGATTTGAGTAAGAG 557
|||||| | |||| ||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 733 GAACCCTTTAGGGCGCATCATCGACCGATCCTGATGTCTTCGGATGGATTTGAGTAAGAG 792
Query 558 CATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAA 617
| || | | |||||||||||||||||| |||| | |||||||||||||||||||||||
Sbjct 793 CTAAGTGGGTCGGACCCGAAAGATGGTGATCTATACGTGAATAGGGTGAAGCCAGAGGAA 852
Query 618 ACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAG 677
|||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||
Sbjct 853 ACTCTGGTGGAGGCTCGCAGCGGTTCTGACGTGCAAATCGATCGTCAAATTTGCGTATAG 912
Query 678 GGGCGA 683
||||||
Sbjct 913 GGGCGA 918
Score = 95.1 bits (104), Expect = 5e-17
Identities = 69/80 (86%), Gaps = 0/80 (0%)
Strand=Plus/Plus
Query 20 CCGTGTGAAGCTCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTA 79
|| |||| | ||| ||| ||||||||| ||||||||||||||||||| ||||||| ||||
Sbjct 13281 CCATGTGTAACTCTTTCTACGAGTCGATTTGTTTGGGAATGCAGCTCAAAATGGGTGGTA 13340
Query 80 AATTTCTTCTAAAGCTAAAT 99
||||| |||||| ||||||
Sbjct 13341 TATTTCATCTAAATCTAAAT 13360
>seq6745
Length=6402
Score = 203 bits (224), Expect = 1e-49
Identities = 171/205 (83%), Gaps = 4/205 (2%)
Strand=Plus/Minus
Query 409 CCGTCTTGGAACACGGACCAAGGAGTCTAAC-ATCTATGCGAGTGTTTGGGTGTCAAACC 467
|||||||| || || ||||||||||| | | || || ||||||||||||| || |||||
Sbjct 6358 CCGTCTTGAAATGCGCACCAAGGAGTCGAGCTATTTA-GCGAGTGTTTGGGCGTTAAACC 6300
Query 468 CGTGCGCGTAATGAAAGTGAACGGAGGTGGGAACCCGTGAGGGTGCACCATCGACCGATC 527
| | ||| |||||||||||||||||| || ||||| | ||| ||| ||||||||||||
Sbjct 6299 CATACGCATAATGAAAGTGAACGGAGATGAGAACCGATTAGGACGCATCATCGACCGATC 6240
Query 528 CTGATGTCTTCGGATGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAA 587
|||||||||||||||| |||||||||||||| ||||| | |||| || ||||||||||
Sbjct 6239 CTGATGTCTTCGGATGTATTTGAGTAAGAGCTAAGCTGGTCGGACTCG-AAGATGGTGAG 6181
Query 588 CTATGCCTGAATAGGGTGAA-GCCA 611
|||| | ||||||||| ||| ||||
Sbjct 6180 CTATACGTGAATAGGGCGAATGCCA 6156
>seq5583
Length=14862
Score = 77.0 bits (84), Expect = 1e-11
Identities = 113/160 (71%), Gaps = 15/160 (9%)
Strand=Plus/Minus
Query 20 CCGTGTGAAGCTCCTTCGACGAGTCGAGTTGTTTGGGAATGCAG---CTCTAAATGGGAG 76
||||||||||| |||||| || || |||| ||||||| ||| |||| ||| ||
Sbjct 4793 CCGTGTGAAGCCTCTTCGAGGATTCTTTTTGTGTGGGAATTCAGCTCCTCTGAATAGGTA 4734
Query 77 GTAA--------ATTTCTTCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTA 128
||| | ||| || ||||||||||||| | ||| || |||| || ||||
Sbjct 4733 ATAATATAATATAGTTCGTCGGAAGCTAAATATTGCCTAGATACTGATATTAAACTAGTA 4674
Query 129 G----AGTGATCGAAAGATGAAAAGCACTTTGGAAAGAGA 164
| ||||| |||| ||| ||||| |||||||||||||
Sbjct 4673 GGGTTGGTGATTGAAATATGGAAAGCTCTTTGGAAAGAGA 4634
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 2079842449750
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |