Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rutstroemia_20echinophila_20[genbank_20GCA_5F000812885.1_202014-12- 31] 7,345 sequences; 40,250,382 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq14 358 1e-96 seq4904 114 2e-23 seq6137 105 1e-20 >seq14 Length=13360 Score = 358 bits (396), Expect = 1e-96 Identities = 203/206 (99%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGGTCATCAGTAGGGTAAAACTAACCTGTCTCA 60 |||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 3690 TACTAAGCTGAATTACCATTGCGGCGACGGTCATCAGTAGGGTAAAACTAACCTGTCTCA 3631 Query 61 TGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGA 120 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 3630 CGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGA 3571 Query 121 ATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTAT 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 3570 ATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTAT 3511 Query 181 GAACGCTTGGCTGCCACAAGCCAGTT 206 |||||||||||||||||||||||||| Sbjct 3510 GAACGCTTGGCTGCCACAAGCCAGTT 3485 Score = 163 bits (180), Expect = 5e-38 Identities = 90/90 (100%), Gaps = 0/90 (0%) Strand=Plus/Minus Query 206 TATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCG 265 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 3085 TATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCG 3026 Query 266 ATAGGCCACACTTTCATGGTTTGTATTCAC 295 |||||||||||||||||||||||||||||| Sbjct 3025 ATAGGCCACACTTTCATGGTTTGTATTCAC 2996 >seq4904 Length=10839 Score = 114 bits (126), Expect = 2e-23 Identities = 74/81 (91%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 120 AATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTA 179 ||||||||||||||||||| || ||||||||||||||||||| |||| |||||||| || Sbjct 4238 AATTCTGCTTCGGTATGATGGGGAGAGCCGACATCGAAGGATAAAAATGCAACGTCATTA 4179 Query 180 TGAACGCTTGGCTGCCACAAG 200 ||| ||||||||||||||||| Sbjct 4178 TGACCGCTTGGCTGCCACAAG 4158 >seq6137 Length=11582 Score = 105 bits (116), Expect = 1e-20 Identities = 76/88 (86%), Gaps = 0/88 (0%) Strand=Plus/Plus Query 207 ATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGA 266 ||||| ||| | |||||| |||| || ||| ||||||| ||||||||||||||||||| Sbjct 647 ATCCCCGTGTCAGCTTTTCCGGCATCTTAAGCTTCAAATTCCGAGGGACTAAAGGATCGA 706 Query 267 TAGGCCACACTTTCATGGTTTGTATTCA 294 ||| |||||||||||||||| ||||||| Sbjct 707 TAGTCCACACTTTCATGGTTCGTATTCA 734 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 854337244320