Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rutstroemia_20echinophila_20[genbank_20GCA_5F000812885.1_202014-12-
31] 7,345 sequences; 40,250,382 total letters
Query= NC_010671.1
Length=124279
Score E
Sequences producing significant alignments: (Bits) Value
seq4887 336 2e-87
seq4745 118 8e-22
>seq4887
Length=16554
Score = 336 bits (372), Expect = 2e-87
Identities = 1220/1877 (65%), Gaps = 64/1877 (3%)
Strand=Plus/Minus
Query 65104 AGCCGCCTTGGTCCTAAGATAGTACATGCCGGTCTTGAGGCCAGCACGCCAAGCATAGAA 65163
||| ||| | || | ||||||||||| || |||||||| || ||| || ||
Sbjct 11983 AGCAGCCATAGTACGGAGATAGTACATTCCAGTCTTGAGACCTAATTTCCATCCAGCAAA 11924
Query 65164 ATGCATCGATGATAATTTTGCATAAT-TCGGCTCGGCCACATGCATATTCAACGACTGAC 65222
|||||| || | | || |||| | | | || || || || || |||| || |||
Sbjct 11923 ATGCATGGAAG-TGATCTTGCCCATTGTAGGGTCCTTCATGTGGATGTTCATTGATTGAG 11865
Query 65223 TCTGATCGATGTAACGACCACGATCTGCAGCCATGTCAATGATACGACGTCCCGATATCT 65282
||||||||| || |||||| ||||| ||||| | || || ||| || || |
Sbjct 11864 ATTGATCGATGAAAGCACCACGGTCTGCGGCCATCTGAACAATGTTTCGTTGAGAGATTT 11805
Query 65283 CCCAGACGGTCTTGTACAGGCGACGT-ACCTCAATTGGAATCTCCTCAATGTCCTGGACT 65341
|||| || |||||||| || | | | | ||| ||| || | ||||| || |
Sbjct 11804 CCCAAACAGTCTTGTAGAGA-GCCTTGAGTTCAGCTGGGATGTTGGGAATGTTTTGAATA 11746
Query 65342 GAACCACGACGT--GCAATAATGCGATTACGCATCGACTCTGACCACAAACCCAAATCGA 65399
|| |||| ||| || || ||||| || ||| || ||||| | |||| ||||
Sbjct 11745 GATCCAC--CGTCAGCGATGATGCGGTTCTTCATGTTGTCAGACCAAAGTCCCATGTCGA 11688
Query 65400 TAAGATG-TTGAACCAAGTGACGA-TTGATGACTTGGAACTCGCCGGACAGTACACGACG 65457
| || |||| ||| | | |||| ||||||||||| |||| ||| ||||||||
Sbjct 11687 CCAAATCCTTGAG--AAGCCATGGGTTGACAACTTGGAACTCTCCGGCCAGCACACGACG 11630
Query 65458 GACATAGATGTTGGACGTGATGGGTTCAAAGGATTCAGTGTTGCCTAGAATTTGGGCAGT 65517
| |||||||||||| ||| || || || |||| || || |||||||| | ||
Sbjct 11629 GGAATAGATGTTGGAAGTGTATGGCTCGAAACATTCGTTGAAACCGAGAATTTGAGATGT 11570
Query 65518 AGATGCAGTTGGCATGGGAGCGACCAACAATGAGTTTCGCAATCC--GTTCATTTCAATG 65575
| ||||||||||| ||||| || | ||| ||| || | || ||| || |
Sbjct 11569 ACTGGCAGTTGGCATAGGAGCAACAAGCAAACTGTTGCGAATACCATGTTGCTTGATAGA 11510
Query 65576 TTG--TGACGCAATTCGTCCCAGTTCCACATCGGTTTATCGTCGACATCCACGGGCCACA 65633
||| ||| || || |||| | ||| | | | | | | | | ||| |||||
Sbjct 11509 TTGCTTGAGGCTAT----CCCAATCCCAGA--GATCTGTAGGAGTAA--CACC--CCACA 11460
Query 65634 TATCCTGTTGCAGGGTTCC----GATACTGGCCGGTGAACCGAGGAAACTATCGTACACT 65689
|||| | ||| || || || ||||| ||||| | | | || ||
Sbjct 11459 TATCATATTGAAGTTCACCCTTGGAAACTGGA----GAACCTTCGTAGGTCTCATATGGG 11404
Query 65690 CCCTCCTCCTTGGCAAGTTGA-CAGCTGGTCTCGAGTGCGGCAAAATAAATGGTCTCGAA 65748
||| ||||||||||| ||| ||| | || || || | || |||||||||||
Sbjct 11403 CCCAACTCCTTGGCAATCTGAACAGACGAAGTCAAG-GCACCGTGGTAGATGGTCTCGAA 11345
Query 65749 AATGCGTCGATTAAGTTCACGTGCCTCATCGCTCTCGTACGGCATACCCAT---CAGGAC 65805
||| | ||||| | |||||| ||| | |||| || | |||||
Sbjct 11344 AATCTGGATGTTAAGATGTTTGGCCTCAGGTGAATCGAATGGCAAACGGAGAGCCAGGA- 11286
Query 65806 AAAAGTGTCGGCCAGACCTTGAACTCCAATACCGATGGGACGATGACGCAAATTGGAACG 65865
| | || || ||||| ||||| |||| | | || || || ||||| || ||
Sbjct 11285 --AGGCATCAGCAAGACCCTGAACACCAACAGCAATAGGTCGGTGACGGAAGTTACTCTT 11228
Query 65866 TCTCGCCTCAGGTACAGGGTAGTAATTGATATCGATAATGCGATTCAAATTGCGTGTCAC 65925
||| || || || ||||| ||||| ||||| || ||||| ||||| || | || ||
Sbjct 11227 TCTAGCTTCTGGGACAGGATAGTAGTTGATGTCAATAATCTTGTTCAAGTTTC-TGACAA 11169
Query 65926 CA-CATGCACGATACGTC--GCAATTGTTCGAAATCAAAATGTTTAGGACGATCGGGAGT 65982
|| | || |||| | || | | | || ||||||| || ||| | || | |
Sbjct 11168 CAACTTGAACGA--CCTCATGAAGCTTTTGGAAATCATAA-GTT-----CCCTCAGCCAT 11117
Query 65983 GCCGGACACCACAAACTTGGGAAGGGCAAGAGATGCGAGGTTGCAGACAGCTATCTCGTC 66042
| | ||||| | || || |||| ||| || | ||| ||| ||| | ||| ||
Sbjct 11116 GTTG------ACAAAGGTTGGGAGAGCAATAGAAGCCAAGTTACAGCAAGCAACCTCATC 11063
Query 66043 AGGAGCGGTATACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATT 66102
|| || | || ||||| ||||| ||||||| || || || || ||||| | ||
Sbjct 11062 CGGTGCAGAGTATTCGACGATTTCTGTGCACAAGTTGGAGCTACGGATTGTGCCGAGGTT 11003
Query 66103 CTGTTGATTACTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTC 66162
|| ||| |||||||| ||||| ||||| ||||| | |||| | || | || |||||
Sbjct 11002 CTTTTGGTTACTCTTTTTGTTGCAAGCATCTTTGTAAAGCATGAAAGGGTTTCCAGTCTC 10943
Query 66163 AACTTGGGACTCAATGATGGCGTGCCAAAGAGCGCGTGCCTTCACCGTACGTACCGCCCT 66222
| |||| ||||| ||||| | |||||| | ||||| | || | ||| || |
Sbjct 10942 AGTCTGGGCCTCAAGGATGGAATACCAAAGCTTTTGAGCCTTGATGGT-CTTACGACCTT 10884
Query 66223 -ACCTTTGCGTTCGTAATGTTCGTAGAGGTGTTCGAAGGATTCACCCCATACTTCGGACA 66281
||||| | |||||| ||| ||||| ||||| ||||| | || || | ||
Sbjct 10883 TACCTTGTCTCTCGTAACCTTCATAGAGAGCCTCGAATTCATCACCATAGACATCAGCCA 10824
Query 66282 GACATGGACACTTGTGTGGACACATCAGCGACCAATCACCATCCTGTTCTACACGACGCA 66341
| |||||| | || || ||||| || | ||| || || | || ||| ||||| ||
Sbjct 10823 AGCCTGGACATTCGTTAGGGCACATGAGTGTCCAGTCTCCGTTCTTTTCAACACGCTTCA 10764
Query 66342 TAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAATGC 66401
| || ||||| || ||||||||||| ||||||||||||||||||| ||||| |||
Sbjct 10763 TGAAGAGATCTGGAATCCAGAGGGCATAGAAGAGATCGCGTGCTCTAACTTCCTCTTTGC 10704
Query 66402 CGTGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTAGA 66461
|||| || || || | ||| | ||||||||||| || |||||||||||||| ||||| |
Sbjct 10703 CGTGGTTCTTTCGGAGGTCCAAGAACTCAAAGACATCCGCATGCCATGGTTCAAGGTAAA 10644
Query 66462 TGGCGAACGAGCCCATACGTTTGCCGCCACCTTGGTCGACGTAGCGAGCGACATTGTTGA 66521
||| || | || || ||| |||||||||||||| || | |||| |||||||
Sbjct 10643 CGGCAAATGCACCAGGGCGCTTGTTACCACCTTGGTCGACATATCTAGCGGTGTTGTTGA 10584
Query 66522 AGACACGCAACATCGGTACGAGCCCGTTAGATTTGCCATTGGTGCCGTCGATGGGGGATC 66581
| || || | ||| || |||| |||||||| || || || ||||| | ||| || |
Sbjct 10583 AAACTCGAAGCATAGGAACGATACCGTTAGAGTTACCGTTTGTGCCTGCAATGTAGGCAC 10524
Query 66582 CTCGTGCCCGTATATCGTGAACATTCAGACCAATACCACCGGCCGTCTTCGAGATGGCAG 66641
| || || || ||| | || |||||||||||||| || |||| || || ||
Sbjct 10523 CAGTAGCACGGATTCTGTGGATGTTGAGACCAATACCACCAGCGTTCTTTGAAATCATAG 10464
Query 66642 CACAATCGGCCACTGTCCGGAATATGCCGTCAATGGAGTCACCCTTGATGGTCAGGAGGT 66701
||||| || || | || || ||||| || |||| || | |||
Sbjct 10463 CACAAATCTTCAAAGTATCATAGATACCATCAATACTATCCTCCTTCATATCAATAAGGA 10404
Query 66702 AGCATGAACTAAGTTGGGGTTTGGGTGTGGCGGCCGAGAAGAGGGTGGGTGTAGCGTGCG 66761
||||||| ||| || | | || || | || |||||||| || || | |||||| |
Sbjct 10403 AGCATGATGAAAGCTGAGCCTGTGGAGTACCCGCAGAGAAGAGTGTTGGAGAAGCGTGTG 10344
Query 66762 TAAAGTAATGGCGAGACATGTAATTGTACGTCTCGATGACAGCATCAATGTTTTCGCCAT 66821
||||||| | | ||||| | ||||| || |||||| || ||||| | || || |
Sbjct 10343 TAAAGTATTTGTTGGACATCAAGTTGTATGTTTCGATGGCACTTTCAATATCATCACCGT 10284
Query 66822 GAATCCCGAGTGCACATCGCATCAGGAGGTATTGAGGCCGTTCGACCAGCCGATCC-TTG 66880
|||| || | ||| ||||| | | | ||| || ||||| | || | ||| | |
Sbjct 10283 GAATACCAACGGCAACACGCATGATCATTTGTTGTGGACGTTC-AGCAACATTTCCGTCG 10225
Query 66881 ATATGCATTAAGTAGGAGCGTTCCAGGGTCTTGATACCAAAGTACGAGTAATTGAAATCG 66940
| | | | | ||| || || || || ||||||| || ||||| ||| || || ||
Sbjct 10224 AGACGGAGGAGGTATGATCGCTCAAGAGTCTTGAATCCGAAGTATTGGTAGTTAAAGTCT 10165
Query 66941 TTAGCATGCACGATGGC 66957
| ||| ||||| ||
Sbjct 10164 CTGTCATAAACGATTGC 10148
>seq4745
Length=15183
Score = 118 bits (130), Expect = 8e-22
Identities = 207/296 (70%), Gaps = 9/296 (3%)
Strand=Plus/Minus
Query 61087 ATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTG 61146
|| |||| |||||||| ||||| || || ||||||||||| | ||||| ||||||||
Sbjct 9591 ATCTGGCAGATGTACAAGAAGGCCGAGGCATCCTTCTGGACCGCAGAGGAAATCGATTTG 9532
Query 61147 TCCAAAGACATGAATGACTGGGA-----GCGTTTATCGAGCGGTGAACAACATTTCATTA 61201
|| || || | | |||||| | | | || || || ||| | | |||||
Sbjct 9531 TCAAAGGATCTTCACGACTGGAACAACAGACTCAAT-GA-CGATGAGCGTTACTTCATCT 9474
Query 61202 AACATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAAC 61261
|| || | || ||||| ||||| || || || || |||||||| || | | ||||
Sbjct 9473 CTCACGTTCTCGCATTCTTCGCCGCATCCGATGGAATTGTCAATGAAAACCTTGTCGAAC 9414
Query 61262 GTTTC-GCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCC 61320
| ||| | | || |||| ||| | |||| || || || |||||||| ||||| ||
Sbjct 9413 GCTTCAGTGGAG-AGGTACAAATTCCGGAAGCACGATGCTTCTACGGTTTCCAAATCATG 9355
Query 61321 ATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGA 61376
||||| || |||||||||| | ||| ||||||||||||| ||||||| |||
Sbjct 9354 ATGGAAAACATCCACTCGGAAACATACTCGCTTCTCATCGATACATACATCAAGGA 9299
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 397532410830800
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