Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rutstroemia_20echinophila_20[genbank_20GCA_5F000812885.1_202014-12- 31] 7,345 sequences; 40,250,382 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq4887 336 2e-87 seq4745 118 8e-22 >seq4887 Length=16554 Score = 336 bits (372), Expect = 2e-87 Identities = 1220/1877 (65%), Gaps = 64/1877 (3%) Strand=Plus/Minus Query 65104 AGCCGCCTTGGTCCTAAGATAGTACATGCCGGTCTTGAGGCCAGCACGCCAAGCATAGAA 65163 ||| ||| | || | ||||||||||| || |||||||| || ||| || || Sbjct 11983 AGCAGCCATAGTACGGAGATAGTACATTCCAGTCTTGAGACCTAATTTCCATCCAGCAAA 11924 Query 65164 ATGCATCGATGATAATTTTGCATAAT-TCGGCTCGGCCACATGCATATTCAACGACTGAC 65222 |||||| || | | || |||| | | | || || || || || |||| || ||| Sbjct 11923 ATGCATGGAAG-TGATCTTGCCCATTGTAGGGTCCTTCATGTGGATGTTCATTGATTGAG 11865 Query 65223 TCTGATCGATGTAACGACCACGATCTGCAGCCATGTCAATGATACGACGTCCCGATATCT 65282 ||||||||| || |||||| ||||| ||||| | || || ||| || || | Sbjct 11864 ATTGATCGATGAAAGCACCACGGTCTGCGGCCATCTGAACAATGTTTCGTTGAGAGATTT 11805 Query 65283 CCCAGACGGTCTTGTACAGGCGACGT-ACCTCAATTGGAATCTCCTCAATGTCCTGGACT 65341 |||| || |||||||| || | | | | ||| ||| || | ||||| || | Sbjct 11804 CCCAAACAGTCTTGTAGAGA-GCCTTGAGTTCAGCTGGGATGTTGGGAATGTTTTGAATA 11746 Query 65342 GAACCACGACGT--GCAATAATGCGATTACGCATCGACTCTGACCACAAACCCAAATCGA 65399 || |||| ||| || || ||||| || ||| || ||||| | |||| |||| Sbjct 11745 GATCCAC--CGTCAGCGATGATGCGGTTCTTCATGTTGTCAGACCAAAGTCCCATGTCGA 11688 Query 65400 TAAGATG-TTGAACCAAGTGACGA-TTGATGACTTGGAACTCGCCGGACAGTACACGACG 65457 | || |||| ||| | | |||| ||||||||||| |||| ||| |||||||| Sbjct 11687 CCAAATCCTTGAG--AAGCCATGGGTTGACAACTTGGAACTCTCCGGCCAGCACACGACG 11630 Query 65458 GACATAGATGTTGGACGTGATGGGTTCAAAGGATTCAGTGTTGCCTAGAATTTGGGCAGT 65517 | |||||||||||| ||| || || || |||| || || |||||||| | || Sbjct 11629 GGAATAGATGTTGGAAGTGTATGGCTCGAAACATTCGTTGAAACCGAGAATTTGAGATGT 11570 Query 65518 AGATGCAGTTGGCATGGGAGCGACCAACAATGAGTTTCGCAATCC--GTTCATTTCAATG 65575 | ||||||||||| ||||| || | ||| ||| || | || ||| || | Sbjct 11569 ACTGGCAGTTGGCATAGGAGCAACAAGCAAACTGTTGCGAATACCATGTTGCTTGATAGA 11510 Query 65576 TTG--TGACGCAATTCGTCCCAGTTCCACATCGGTTTATCGTCGACATCCACGGGCCACA 65633 ||| ||| || || |||| | ||| | | | | | | | | ||| ||||| Sbjct 11509 TTGCTTGAGGCTAT----CCCAATCCCAGA--GATCTGTAGGAGTAA--CACC--CCACA 11460 Query 65634 TATCCTGTTGCAGGGTTCC----GATACTGGCCGGTGAACCGAGGAAACTATCGTACACT 65689 |||| | ||| || || || ||||| ||||| | | | || || Sbjct 11459 TATCATATTGAAGTTCACCCTTGGAAACTGGA----GAACCTTCGTAGGTCTCATATGGG 11404 Query 65690 CCCTCCTCCTTGGCAAGTTGA-CAGCTGGTCTCGAGTGCGGCAAAATAAATGGTCTCGAA 65748 ||| ||||||||||| ||| ||| | || || || | || ||||||||||| Sbjct 11403 CCCAACTCCTTGGCAATCTGAACAGACGAAGTCAAG-GCACCGTGGTAGATGGTCTCGAA 11345 Query 65749 AATGCGTCGATTAAGTTCACGTGCCTCATCGCTCTCGTACGGCATACCCAT---CAGGAC 65805 ||| | ||||| | |||||| ||| | |||| || | ||||| Sbjct 11344 AATCTGGATGTTAAGATGTTTGGCCTCAGGTGAATCGAATGGCAAACGGAGAGCCAGGA- 11286 Query 65806 AAAAGTGTCGGCCAGACCTTGAACTCCAATACCGATGGGACGATGACGCAAATTGGAACG 65865 | | || || ||||| ||||| |||| | | || || || ||||| || || Sbjct 11285 --AGGCATCAGCAAGACCCTGAACACCAACAGCAATAGGTCGGTGACGGAAGTTACTCTT 11228 Query 65866 TCTCGCCTCAGGTACAGGGTAGTAATTGATATCGATAATGCGATTCAAATTGCGTGTCAC 65925 ||| || || || ||||| ||||| ||||| || ||||| ||||| || | || || Sbjct 11227 TCTAGCTTCTGGGACAGGATAGTAGTTGATGTCAATAATCTTGTTCAAGTTTC-TGACAA 11169 Query 65926 CA-CATGCACGATACGTC--GCAATTGTTCGAAATCAAAATGTTTAGGACGATCGGGAGT 65982 || | || |||| | || | | | || ||||||| || ||| | || | | Sbjct 11168 CAACTTGAACGA--CCTCATGAAGCTTTTGGAAATCATAA-GTT-----CCCTCAGCCAT 11117 Query 65983 GCCGGACACCACAAACTTGGGAAGGGCAAGAGATGCGAGGTTGCAGACAGCTATCTCGTC 66042 | | ||||| | || || |||| ||| || | ||| ||| ||| | ||| || Sbjct 11116 GTTG------ACAAAGGTTGGGAGAGCAATAGAAGCCAAGTTACAGCAAGCAACCTCATC 11063 Query 66043 AGGAGCGGTATACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATT 66102 || || | || ||||| ||||| ||||||| || || || || ||||| | || Sbjct 11062 CGGTGCAGAGTATTCGACGATTTCTGTGCACAAGTTGGAGCTACGGATTGTGCCGAGGTT 11003 Query 66103 CTGTTGATTACTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTC 66162 || ||| |||||||| ||||| ||||| ||||| | |||| | || | || ||||| Sbjct 11002 CTTTTGGTTACTCTTTTTGTTGCAAGCATCTTTGTAAAGCATGAAAGGGTTTCCAGTCTC 10943 Query 66163 AACTTGGGACTCAATGATGGCGTGCCAAAGAGCGCGTGCCTTCACCGTACGTACCGCCCT 66222 | |||| ||||| ||||| | |||||| | ||||| | || | ||| || | Sbjct 10942 AGTCTGGGCCTCAAGGATGGAATACCAAAGCTTTTGAGCCTTGATGGT-CTTACGACCTT 10884 Query 66223 -ACCTTTGCGTTCGTAATGTTCGTAGAGGTGTTCGAAGGATTCACCCCATACTTCGGACA 66281 ||||| | |||||| ||| ||||| ||||| ||||| | || || | || Sbjct 10883 TACCTTGTCTCTCGTAACCTTCATAGAGAGCCTCGAATTCATCACCATAGACATCAGCCA 10824 Query 66282 GACATGGACACTTGTGTGGACACATCAGCGACCAATCACCATCCTGTTCTACACGACGCA 66341 | |||||| | || || ||||| || | ||| || || | || ||| ||||| || Sbjct 10823 AGCCTGGACATTCGTTAGGGCACATGAGTGTCCAGTCTCCGTTCTTTTCAACACGCTTCA 10764 Query 66342 TAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAATGC 66401 | || ||||| || ||||||||||| ||||||||||||||||||| ||||| ||| Sbjct 10763 TGAAGAGATCTGGAATCCAGAGGGCATAGAAGAGATCGCGTGCTCTAACTTCCTCTTTGC 10704 Query 66402 CGTGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTAGA 66461 |||| || || || | ||| | ||||||||||| || |||||||||||||| ||||| | Sbjct 10703 CGTGGTTCTTTCGGAGGTCCAAGAACTCAAAGACATCCGCATGCCATGGTTCAAGGTAAA 10644 Query 66462 TGGCGAACGAGCCCATACGTTTGCCGCCACCTTGGTCGACGTAGCGAGCGACATTGTTGA 66521 ||| || | || || ||| |||||||||||||| || | |||| ||||||| Sbjct 10643 CGGCAAATGCACCAGGGCGCTTGTTACCACCTTGGTCGACATATCTAGCGGTGTTGTTGA 10584 Query 66522 AGACACGCAACATCGGTACGAGCCCGTTAGATTTGCCATTGGTGCCGTCGATGGGGGATC 66581 | || || | ||| || |||| |||||||| || || || ||||| | ||| || | Sbjct 10583 AAACTCGAAGCATAGGAACGATACCGTTAGAGTTACCGTTTGTGCCTGCAATGTAGGCAC 10524 Query 66582 CTCGTGCCCGTATATCGTGAACATTCAGACCAATACCACCGGCCGTCTTCGAGATGGCAG 66641 | || || || ||| | || |||||||||||||| || |||| || || || Sbjct 10523 CAGTAGCACGGATTCTGTGGATGTTGAGACCAATACCACCAGCGTTCTTTGAAATCATAG 10464 Query 66642 CACAATCGGCCACTGTCCGGAATATGCCGTCAATGGAGTCACCCTTGATGGTCAGGAGGT 66701 ||||| || || | || || ||||| || |||| || | ||| Sbjct 10463 CACAAATCTTCAAAGTATCATAGATACCATCAATACTATCCTCCTTCATATCAATAAGGA 10404 Query 66702 AGCATGAACTAAGTTGGGGTTTGGGTGTGGCGGCCGAGAAGAGGGTGGGTGTAGCGTGCG 66761 ||||||| ||| || | | || || | || |||||||| || || | |||||| | Sbjct 10403 AGCATGATGAAAGCTGAGCCTGTGGAGTACCCGCAGAGAAGAGTGTTGGAGAAGCGTGTG 10344 Query 66762 TAAAGTAATGGCGAGACATGTAATTGTACGTCTCGATGACAGCATCAATGTTTTCGCCAT 66821 ||||||| | | ||||| | ||||| || |||||| || ||||| | || || | Sbjct 10343 TAAAGTATTTGTTGGACATCAAGTTGTATGTTTCGATGGCACTTTCAATATCATCACCGT 10284 Query 66822 GAATCCCGAGTGCACATCGCATCAGGAGGTATTGAGGCCGTTCGACCAGCCGATCC-TTG 66880 |||| || | ||| ||||| | | | ||| || ||||| | || | ||| | | Sbjct 10283 GAATACCAACGGCAACACGCATGATCATTTGTTGTGGACGTTC-AGCAACATTTCCGTCG 10225 Query 66881 ATATGCATTAAGTAGGAGCGTTCCAGGGTCTTGATACCAAAGTACGAGTAATTGAAATCG 66940 | | | | | ||| || || || || ||||||| || ||||| ||| || || || Sbjct 10224 AGACGGAGGAGGTATGATCGCTCAAGAGTCTTGAATCCGAAGTATTGGTAGTTAAAGTCT 10165 Query 66941 TTAGCATGCACGATGGC 66957 | ||| ||||| || Sbjct 10164 CTGTCATAAACGATTGC 10148 >seq4745 Length=15183 Score = 118 bits (130), Expect = 8e-22 Identities = 207/296 (70%), Gaps = 9/296 (3%) Strand=Plus/Minus Query 61087 ATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTG 61146 || |||| |||||||| ||||| || || ||||||||||| | ||||| |||||||| Sbjct 9591 ATCTGGCAGATGTACAAGAAGGCCGAGGCATCCTTCTGGACCGCAGAGGAAATCGATTTG 9532 Query 61147 TCCAAAGACATGAATGACTGGGA-----GCGTTTATCGAGCGGTGAACAACATTTCATTA 61201 || || || | | |||||| | | | || || || ||| | | ||||| Sbjct 9531 TCAAAGGATCTTCACGACTGGAACAACAGACTCAAT-GA-CGATGAGCGTTACTTCATCT 9474 Query 61202 AACATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAAC 61261 || || | || ||||| ||||| || || || || |||||||| || | | |||| Sbjct 9473 CTCACGTTCTCGCATTCTTCGCCGCATCCGATGGAATTGTCAATGAAAACCTTGTCGAAC 9414 Query 61262 GTTTC-GCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCC 61320 | ||| | | || |||| ||| | |||| || || || |||||||| ||||| || Sbjct 9413 GCTTCAGTGGAG-AGGTACAAATTCCGGAAGCACGATGCTTCTACGGTTTCCAAATCATG 9355 Query 61321 ATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGA 61376 ||||| || |||||||||| | ||| ||||||||||||| ||||||| ||| Sbjct 9354 ATGGAAAACATCCACTCGGAAACATACTCGCTTCTCATCGATACATACATCAAGGA 9299 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397532410830800