Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rutstroemia_20echinophila_20[genbank_20GCA_5F000812885.1_202014-12- 31] 7,345 sequences; 40,250,382 total letters Query= NC_032108.1 Length=589068 Score E Sequences producing significant alignments: (Bits) Value seq5182 86.0 2e-11 >seq5182 Length=15329 Score = 86.0 bits (94), Expect = 2e-11 Identities = 158/230 (69%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 12814 ACCTAGGGTCTTTCCTCTAACTTCACGGCAACCTTGAGA--AGTCTTGTTCCAAATGCCT 12871 |||||| || || |||| || ||| | ||| |||| | | || ||||||| || Sbjct 7016 ACCTAGCGTTTTGCCTCGAATTTCCCAGCA--CTTGTTACTAACTTTATTCCAAACACCA 6959 Query 12872 TGGTGTAGTTCTTTGTTTCTATCTCCAACCTGACGAGAAAGATTAATTAGTTGTCCTATG 12931 | ||| | ||| || || ||||||| ||||||| |||| || | || || ||| Sbjct 6958 TTGTGCAATTCATTCGATCGGTCTCCAAGTTGACGAGCAAGAACGATAATTTCACCGATG 6899 Query 12932 ATGAGCTCTGCCACGCTTCTAGTGTTGCAAAAGGGAGAATTAAAGACTGCAATGCCTAGT 12991 | |||||||||||||||| || ||| ||| || || || || || ||||| || || Sbjct 6898 ACTAGCTCTGCCACGCTTCGAGAGTTTGCAAATGGTGAGTTGAAAACCGCAATTCCATGT 6839 Query 12992 TTGGTAGCCATGTCTAGATTAACCTGATCGTAACCAATGCAGAAGCATCC 13041 ||| ||| || |||| || |||| ||||||||||| ||||| Sbjct 6838 CTGGCAGCGTATTCGAGATCGACTTGATTTGTGCCAATGCAGAAACATCC 6789 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1884709017464085