Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rutstroemia_20sydowiana_20[genbank_20GCA_5F000812895.1_202014-12-31] 11,777 sequences; 51,994,176 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq45 845 0.0 seq1192 618 2e-174 seq1720 462 9e-128 seq3174 361 2e-97 seq10261 349 1e-93 seq1617 232 3e-58 seq11038 116 2e-23 seq11252 111 7e-22 seq10569 107 8e-21 >seq45 Length=15910 Score = 845 bits (936), Expect = 0.0 Identities = 590/666 (89%), Gaps = 4/666 (1%) Strand=Plus/Plus Query 20 CCGTGTGAAGCTCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTA 79 || |||||| ||| ||||||||||||||||||||||||||||||||| ||||||| |||| Sbjct 1330 CCATGTGAAACTCTTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTA 1389 Query 80 AATTTCTTCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAA 139 ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1390 TATTTCATCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAA 1449 Query 140 AGATGAAAAGCACTTTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199 ||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||| Sbjct 1450 AGATGAAAAGCACTTTGGAAAGAGAGTTAAACAGTACGTGAAATTGTTGAAAGGGAAGCG 1509 Query 200 CTTGCAACCAGACTTGCCCGCAGTTGCTCAACC-GGCCCCTCGGCCGGTGCACTCTTCTG 258 ||||||| ||||||||| | ||||| ||| || ||| || | | ||||||||| | Sbjct 1510 CTTGCAATCAGACTTGCGCCTAGTTGATCATCCAGGCTTCT-GTCTGGTGCACTCAATTA 1568 Query 259 CGGTCAGGCCAGCATCAGCTCGGGCGGTCGGATAAAGGCCCCGGGAATGTGGCCCCCTTC 318 | ||||||||||||| | | | | || |||||||||| ||||||||||| ||||| Sbjct 1569 GGCTCAGGCCAGCATCGGTTTGAGTAGTTGGATAAAGGCTTAGGGAATGTGGCTTCCTTC 1628 Query 319 GGGGGGTGTTATAGCCCGGGGTGGAATGCGGCCCGCCTGGACTGAGGTCCGCGCTCCGGC 378 |||| |||||||||||| |||| ||||| || | | ||||| |||| ||||||| |||| Sbjct 1629 GGGGAGTGTTATAGCCCTAGGTGCAATGCAGCTCACTTGGACCGAGGACCGCGCTTCGGC 1688 Query 379 TAGGATGCTGGCGTAATGGTTGTAAGCGGCCCGTCTTGGAACACGGACCAAGGAGTCTAA 438 |||||||||||||||||||||||||||| ||||||||| |||||||||||||||||| | Sbjct 1689 TAGGATGCTGGCGTAATGGTTGTAAGCGACCCGTCTTGAAACACGGACCAAGGAGTCGAC 1748 Query 439 C-ATCTATGCGAGTGTTTGGGTGTCAAACCCGTGCGCGTAATGAAAGTGAACGGAGGTGG 497 | || || |||||||||||||||| |||||| | ||||||||||||||||||||||||| Sbjct 1749 CTATTTA-GCGAGTGTTTGGGTGTTAAACCCATACGCGTAATGAAAGTGAACGGAGGTGA 1807 Query 498 GAACCCGTGAGGGTGCACCATCGACCGATCCTGATGTCTTCGGATGGATTTGAGTAAGAG 557 |||||| | |||| ||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 1808 GAACCCATTAGGGCGCATCATCGACCGATCCTGATGTCTTCGGATGGATTTGAGTAAGAG 1867 Query 558 CATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAA 617 | || | | |||||||||||||||||| |||| | ||||||||||||||||||||||| Sbjct 1868 CTAAGTGGGTCGGACCCGAAAGATGGTGATCTATACGTGAATAGGGTGAAGCCAGAGGAA 1927 Query 618 ACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAG 677 |||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||| Sbjct 1928 ACTCTGGTGGAGGCTCGCAGCGGTTCTGACGTGCAAATCGATCGTCAAATTTGCGTATAG 1987 Query 678 GGGCGA 683 |||||| Sbjct 1988 GGGCGA 1993 >seq1192 Length=650 Score = 618 bits (684), Expect = 2e-174 Identities = 505/603 (84%), Gaps = 14/603 (2%) Strand=Plus/Minus Query 23 TGTGAAGCTCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAAT 82 ||| |||||||||||||||||||||| |||||||||||| ||||||||||||||||| || Sbjct 592 TGTAAAGCTCCTTCGACGAGTCGAGTAGTTTGGGAATGCTGCTCTAAATGGGAGGTATAT 533 Query 83 TTCTTCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGA 142 ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 532 GTCTTCTAAAGCTAAAGATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGA 473 Query 143 TGAAAAGCACTTTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCGCTT 202 |||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||| Sbjct 472 TGAAAAGCACTTTGAAAAGAGAGTTAAAAAGGACGTGAAATTGTTGAAAGGGAAGCGCTC 413 Query 203 GCAACCAGACTTGCCCGCAGTTGCTCAACC-GGCCCCTCGGCCGGTGCACTCTTCTGCGG 261 |||||||||| | |||| ||| || || ||| | |||||||||||| | Sbjct 412 ATGACCAGACTTGGGCTTGGTTGATCATCCAGGGTTCTC-CCTGGTGCACTCTTC-CAGT 355 Query 262 TCAGGCCAGCATCAGCTCGGGCGGTCGGATAAAGGCCCCGGGAATGTGGCCCCCTTCGGG 321 ||||||||||||||| ||| | |||||||||| ||||||||||| |||| || Sbjct 354 TCAGGCCAGCATCAGTTCGCTGTGGGGGATAAAGGCTTTGGGAATGTGGCTCCCT--CGG 297 Query 322 GGGTGTTATAGCCCGGGGTGGAATGCGGCCCG-CCTGGACTGAGGTCCGCGCTCCGGCTA 380 | |||||||||||| ||| ||| | || | ||||||||||| ||||| || | Sbjct 296 GAGTGTTATAGCCCATTGTGTAATAC--CCTGTGGTGGACTGAGGTTCGCGCATTCGCAA 239 Query 381 GGATGCTGGCGTAATGGTTGTAAGCGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACA 440 |||||||||||||||||| | |||| ||||||||| |||||||||||||||||| | Sbjct 238 GGATGCTGGCGTAATGGTCATCAGCGACCCGTCTTGAAACACGGACCAAGGAGTC-GTCT 180 Query 441 TC-TATGCGAGTGTTTGGGTGTCAAACCCGTGCGCGTAATGAAAGTGAACGGAGGTGGGA 499 || |||||||||||| |||||| |||||| | ||||||||||||||||||| ||||| || Sbjct 179 TCGTATGCGAGTGTTCGGGTGTTAAACCCCTACGCGTAATGAAAGTGAACGCAGGTGAGA 120 Query 500 ACCCGTGAGGGTGCACCATCGACCGATCCTGATGTCTTCGGATGGATTTGAGTAAGAGCA 559 | || ||| ||||||||||||||||||| ||||||||||||||||||||||| Sbjct 119 ----GCTTCGGCGCATCATCGACCGATCCTGATGTTCTCGGATGGATTTGAGTAAGAGCA 64 Query 560 TAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAAC 619 || | |||||||||||| ||||||||||||||| |||||||||||||||||||||| Sbjct 63 TACGGGGCCGGACCCGAAAGAAGGTGAACTATGCCTGTATAGGGTGAAGCCAGAGGAAAC 4 Query 620 TCT 622 ||| Sbjct 3 TCT 1 >seq1720 Length=7216 Score = 462 bits (512), Expect = 9e-128 Identities = 334/386 (87%), Gaps = 0/386 (0%) Strand=Plus/Plus Query 242 GCCGGTGCACTCTTCTGCGGTCAGGCCAGCATCAGCTCGGGCGGTCGGATAAAGGCCCCG 301 ||||||| ||| | |||| | ||||||| || | | |||||||||| |||||||| Sbjct 6831 GCCGGTGTACTTCCCCGCGGGCGGGCCAGCGTCGGTTTGGGCGGTCGGTCAAAGGCCCTC 6890 Query 302 GGAATGTGGCCCCCTTCGGGGGGTGTTATAGCCCGGGGTGGAATGCGGCCCGCCTGGACT 361 |||| || | ||| | |||| || |||||||| ||||| |||||| || |||| ||| Sbjct 6891 GGAAGGTAACGCCCCTAGGGGCGTCTTATAGCCGAGGGTGCAATGCGACCTGCCTAGACC 6950 Query 362 GAGGTCCGCGCTCCGGCTAGGATGCTGGCGTAATGGTTGTAAGCGGCCCGTCTTGGAACA 421 |||| |||||| ||||| ||| |||||| ||||||| |||| || ||||||||| |||| Sbjct 6951 GAGGAACGCGCTTCGGCTCGGACGCTGGCATAATGGTCGTAAACGACCCGTCTTGAAACA 7010 Query 422 CGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTGTCAAACCCGTGCGCGTAATGA 481 ||||||||||||||||||||||| ||||||||| |||||||||||||||||||| | ||| Sbjct 7011 CGGACCAAGGAGTCTAACATCTACGCGAGTGTTCGGGTGTCAAACCCGTGCGCGAAGTGA 7070 Query 482 AAGTGAACGGAGGTGGGAACCCGTGAGGGTGCACCATCGACCGATCCTGATGTCTTCGGA 541 ||| |||||||||||||||||| |||||||||||||||||||||||| ||||||||| Sbjct 7071 AAGCGAACGGAGGTGGGAACCCTCACGGGTGCACCATCGACCGATCCTGAAGTCTTCGGA 7130 Query 542 TGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAG 601 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 7131 TGGATTTGAGTAAGAGCGTAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAG 7190 Query 602 GGTGAAGCCAGAGGAAACTCTGGTGG 627 || ||||||||||||||||||||||| Sbjct 7191 GGCGAAGCCAGAGGAAACTCTGGTGG 7216 >seq3174 Length=2055 Score = 361 bits (400), Expect = 2e-97 Identities = 232/253 (92%), Gaps = 0/253 (0%) Strand=Plus/Plus Query 431 GAGTCTAACATCTATGCGAGTGTTTGGGTGTCAAACCCGTGCGCGTAATGAAAGTGAACG 490 |||||||||||||| ||||||||| |||||||||||||||||||| | |||||| ||||| Sbjct 1 GAGTCTAACATCTACGCGAGTGTTCGGGTGTCAAACCCGTGCGCGAAGTGAAAGCGAACG 60 Query 491 GAGGTGGGAACCCGTGAGGGTGCACCATCGACCGATCCTGATGTCTTCGGATGGATTTGA 550 ||||||||||||| |||||||||||||||||||||||| |||||||||||||||||| Sbjct 61 GAGGTGGGAACCCTCACGGGTGCACCATCGACCGATCCTGAAGTCTTCGGATGGATTTGA 120 Query 551 GTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCC 610 |||||||| |||||||||||||||||||||||||||||||||||||||||||| || ||| Sbjct 121 GTAAGAGCGTAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGAGATGCC 180 Query 611 AGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTG 670 ||||| |||| |||||| |||| | |||||||||| ||||||||||||||||| |||||| Sbjct 181 AGAGGGAACTATGGTGGGGGCTAGTAGCGGTTCTGACGTGCAAATCGATCGTCGAATTTG 240 Query 671 GGTATAGGGGCGA 683 |||||||||||| Sbjct 241 CGTATAGGGGCGA 253 >seq10261 Length=37430 Score = 349 bits (386), Expect = 1e-93 Identities = 230/253 (91%), Gaps = 1/253 (0%) Strand=Plus/Plus Query 431 GAGTCTAACATCTATGCGAGTGTTTGGGTGTCAAACCCGTGCGCGTAATGAAAGTGAACG 490 |||||||||||||| ||||||||| |||||||||||||||||||| | |||||| ||||| Sbjct 1 GAGTCTAACATCTACGCGAGTGTTCGGGTGTCAAACCCGTGCGCGAAGTGAAAGCGAACG 60 Query 491 GAGGTGGGAACCCGTGAGGGTGCACCATCGACCGATCCTGATGTCTTCGGATGGATTTGA 550 ||||||||||||| |||||||||||||||||||||||| |||||||||||||||||| Sbjct 61 GAGGTGGGAACCCTCACGGGTGCACCATCGACCGATCCTGAAGTCTTCGGATGGATTTGA 120 Query 551 GTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCC 610 |||||||| |||||||||||||||||||||||||||||||||||||||||||| || ||| Sbjct 121 GTAAGAGCGTAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGAGATGCC 180 Query 611 AGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTG 670 ||||| |||| |||||| |||| | |||||||||| |||||||||||||||||| ||||| Sbjct 181 AGAGGGAACTATGGTGGGGGCTAGTAGCGGTTCTGACGTGCAAATCGATCGTCAGATTTG 240 Query 671 G-GTATAGGGGCG 682 | ||||||| || Sbjct 241 GATTATAGGGACG 253 >seq1617 Length=621 Score = 232 bits (256), Expect = 3e-58 Identities = 139/146 (95%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 23 TGTGAAGCTCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAAT 82 ||| |||||||||||||||||||||| |||||||||||| ||||||||||||||||| || Sbjct 146 TGTAAAGCTCCTTCGACGAGTCGAGTAGTTTGGGAATGCTGCTCTAAATGGGAGGTATAT 87 Query 83 TTCTTCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGA 142 ||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||| Sbjct 86 GTCTTCTAAAGCTAAATATTGGCCAGAGACCGATCGCGCACAAGTAGAGTGATCGACAGA 27 Query 143 TGAAAAGCACTTTGGAAAGAGAGTTA 168 |||||||||||||||||||||||||| Sbjct 26 TGAAAAGCACTTTGGAAAGAGAGTTA 1 >seq11038 Length=726 Score = 116 bits (128), Expect = 2e-23 Identities = 81/92 (88%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 20 CCGTGTGAAGCTCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTA 79 || |||||| ||| ||||||||||||||||||||| || | |||||| ||||||| |||| Sbjct 701 CCATGTGAAACTCTTTCGACGAGTCGAGTTGTTTGAGATTACAGCTCAAAATGGGTGGTA 642 Query 80 AATTTCTTCTAAAGCTAAATATTGGCCAGAGA 111 ||||| ||||||||||||||| ||||||||| Sbjct 641 TATTTCATCTAAAGCTAAATATGGGCCAGAGA 610 >seq11252 Length=13259 Score = 111 bits (122), Expect = 7e-22 Identities = 92/111 (83%), Gaps = 1/111 (1%) Strand=Plus/Minus Query 314 CCTTCGGGGGGTGTTATAGCCCGGGGTGGAATGCGGCCCGCCTGGACTGAGGTCCGCGCT 373 ||||||||| |||||||||||| |||| ||||| || | | ||||| |||| ||||||| Sbjct 10367 CCTTCGGGGAGTGTTATAGCCCTAGGTGCAATGCAGCTCACTTGGACCGAGGACCGCGCT 10308 Query 374 CCGGCTAGGATGCTGGCGTAATGGTTGTAAGCGGCCCGTCTTGGAACACGG 424 || |||| ||||||||||| | |||||||| | |||||||| ||||||| Sbjct 10307 TCGACTAGAATGCTGGCGTAGAGATTGTAAGC-GACCGTCTTGAAACACGG 10258 >seq10569 Length=11831 Score = 107 bits (118), Expect = 8e-21 Identities = 64/67 (96%), Gaps = 0/67 (0%) Strand=Plus/Minus Query 102 TGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAAAG 161 ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 6462 TGGCCAGAGACCGCTAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGAAAAG 6403 Query 162 AGAGTTA 168 ||| ||| Sbjct 6402 AGAATTA 6396 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079747383350