Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rutstroemia_20sydowiana_20[genbank_20GCA_5F000812895.1_202014-12-31] 11,777 sequences; 51,994,176 total letters Query= AAMG01000636.1 Length=426 Score E Sequences producing significant alignments: (Bits) Value seq10042 93.3 1e-16 >seq10042 Length=55948 Score = 93.3 bits (102), Expect = 1e-16 Identities = 117/161 (73%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 7 TACACTGCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCC 66 || |||| |||| ||||| ||| ||||||||||||| | | |||||||| | Sbjct 23139 TAAACTGTATCTGCACAGTTATTCCAATTTCACTGAGCCAATCATTGAGACAGCTGTTGC 23080 Query 67 ATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGA 126 ||||||| ||||| |||| | | | | ||| | | || || ||| ||||||||||||| Sbjct 23079 ATCGTTAAATCATTCATGCAAGACCGCATTTAACGGCCAGGGTATTCCGCTACCTTAGGA 23020 Query 127 CCGTTATTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAA 167 || | || | || ||||||| || | ||||| ||| |||| Sbjct 23019 CCCTCATAGGTAAGGCCGCCATTGATCGGGGTTTCCTTCAA 22979 Score = 93.3 bits (102), Expect = 1e-16 Identities = 117/161 (73%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 7 TACACTGCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCC 66 || |||| |||| ||||| ||| ||||||||||||| | | |||||||| | Sbjct 32810 TAAACTGTATCTGCACAGTTATTCCAATTTCACTGAGCCAATCATTGAGACAGCTGTTGC 32869 Query 67 ATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGA 126 ||||||| ||||| |||| | | | | ||| | | || || ||| ||||||||||||| Sbjct 32870 ATCGTTAAATCATTCATGCAAGACCGCATTTAACGGCCAGGGTATTCCGCTACCTTAGGA 32929 Query 127 CCGTTATTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAA 167 || | || | || ||||||| || | ||||| ||| |||| Sbjct 32930 CCCTCATAGGTAAGGCCGCCATTGATCGGGGTTTCCTTCAA 32970 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1260651515584