Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rutstroemia_20sydowiana_20[genbank_20GCA_5F000812895.1_202014-12-31] 11,777 sequences; 51,994,176 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq45 361 9e-98 seq794 223 6e-56 seq2253 125 1e-26 seq10146 114 2e-23 seq11464 75.2 2e-11 >seq45 Length=15910 Score = 361 bits (400), Expect = 9e-98 Identities = 235/257 (91%), Gaps = 1/257 (0%) Strand=Plus/Minus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 15834 ACTCGTTGGCTCTGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 15775 Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCC 121 |||||||||||||||||||||||| |||| || ||| ||||||||||||||||||| || Sbjct 15774 CCTGTTATTGCCTCAAACTTCCATCGGCTTGA-GCCGATAGTCCCTCTAAGAAGCCGGCG 15716 Query 122 ACCAACCATAGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAA 181 |||| ||| || ||||||||||||||||||||||||||||||||||| |||||| Sbjct 15715 ACCAGCCAAAGCTAGCCTGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGCAATTAA 15656 Query 182 CCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAA 241 ||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| Sbjct 15655 GCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCACAAAATCAAGAA 15596 Query 242 AGAGCTATCAATCTGTC 258 |||||| |||||||||| Sbjct 15595 AGAGCTCTCAATCTGTC 15579 >seq794 Length=388 Score = 223 bits (246), Expect = 6e-56 Identities = 161/185 (87%), Gaps = 1/185 (1%) Strand=Plus/Plus Query 74 TCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCACCAACCATAGT 133 |||| ||||||| |||| || ||| ||||||||||||||||||| || |||| ||| || Sbjct 1 TCAACCTTCCATCGGCTTGA-GCCGATAGTCCCTCTAAGAAGCCGGCGACCAGCCAAAGC 59 Query 134 CGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCA 193 ||||||||||||||||||||||||||||||||||| |||||| ||||||||||| Sbjct 60 TAGCCTGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGCAATTAAGCAGACAAATCA 119 Query 194 CTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAAT 253 |||||||||||||||||||||||||| |||||||| | || |||||||||||| ||||| Sbjct 120 CTCCACCAACTAAGAACGGCCATGCAGCACCACCCGCAAAAGCAAGAAAGAGCTCTCAAT 179 Query 254 CTGTC 258 ||||| Sbjct 180 CTGTC 184 >seq2253 Length=2829 Score = 125 bits (138), Expect = 1e-26 Identities = 83/91 (91%), Gaps = 1/91 (1%) Strand=Plus/Plus Query 139 GGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCA 198 |||||||||| || |||||||||||||||||| |||||||||||||||||| |||| Sbjct 2739 GGGCTATTTAAG-GGCCGAGGTCTCGTTCGTTATCGCAATTAACCAGACAAATCATTCCA 2797 Query 199 CCAACTAAGAACGGCCATGCACCACCACCCA 229 ||||||||||||||||||||||||||||||| Sbjct 2798 CCAACTAAGAACGGCCATGCACCACCACCCA 2828 >seq10146 Length=30714 Score = 114 bits (126), Expect = 2e-23 Identities = 85/97 (88%), Gaps = 2/97 (2%) Strand=Plus/Minus Query 113 AAGCCAGCCACCAACCATAGTCGATGG-GGCTATTTAGCAGGTTAAGGTCTCGTTCGTTA 171 ||||| || |||| ||| || | | | |||||||||||||||||||||||||||||||| Sbjct 96 AAGCCGGCGACCAGCCAAAG-CTAGGCCGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTA 38 Query 172 TCGGAATTAACCAGACAAATCACTCCACCAACTAAGA 208 ||| ||||| |||||||||||||||||||||||||| Sbjct 37 TCGCCATTAAGCAGACAAATCACTCCACCAACTAAGA 1 >seq11464 Length=3087 Score = 75.2 bits (82), Expect = 2e-11 Identities = 49/54 (91%), Gaps = 0/54 (0%) Strand=Plus/Plus Query 197 CACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATC 250 |||||||||||||||| ||||||||||||||| | ||||||||||||||| || Sbjct 2208 CACCAACTAAGAACGGATATGCACCACCACCCACAAAATCAAGAAAGAGCTCTC 2261 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796709093337