Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rutstroemia_20sydowiana_20[genbank_20GCA_5F000812895.1_202014-12-31] 11,777 sequences; 51,994,176 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq45 210 4e-52 >seq45 Length=15910 Score = 210 bits (232), Expect = 4e-52 Identities = 116/116 (100%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 150 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 5027 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 4968 Query 151 CATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTT 206 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 4967 CATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTT 4912 Score = 161 bits (178), Expect = 2e-37 Identities = 89/89 (100%), Gaps = 0/89 (0%) Strand=Plus/Minus Query 207 ATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGA 266 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 4512 ATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGA 4453 Query 267 TAGGCCACACTTTCATGGTTTGTATTCAC 295 ||||||||||||||||||||||||||||| Sbjct 4452 TAGGCCACACTTTCATGGTTTGTATTCAC 4424 Score = 152 bits (168), Expect = 9e-35 Identities = 89/92 (97%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGGTCATCAGTAGGGTAAAACTAACCTGTCTCA 60 |||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 5433 TACTAAGCTGAATTACCATTGCGGCGACGGTCATCAGTAGGGTAAAACTAACCTGTCTCA 5374 Query 61 TGACGGTCTAAACCCAGCTCACGTTCCCTATT 92 ||||||||||||||||||||||||||||||| Sbjct 5373 CGACGGTCTAAACCCAGCTCACGTTCCCTATT 5342 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 854299377312