Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rutstroemia_20sydowiana_20[genbank_20GCA_5F000812895.1_202014-12-31]
11,777 sequences; 51,994,176 total letters
Query= AAMG01002186.1
Length=328
Score E
Sequences producing significant alignments: (Bits) Value
seq45 367 2e-99
seq794 145 1e-32
seq11464 80.6 5e-13
seq10146 73.4 7e-11
>seq45
Length=15910
Score = 367 bits (406), Expect = 2e-99
Identities = 232/254 (91%), Gaps = 13/254 (5%)
Strand=Plus/Plus
Query 20 GAGCGAGACCTTAACCTGCTAAATAGCCAGGCCCGCTTTGGCGGGTCGCCGGCTTCTTAG 79
|| ||||||||||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 15670 GAACGAGACCTTAACCTGCTAAATAGCCAGGCTAGCTTTGGCTGGTCGCCGGCTTCTTAG 15729
Query 80 AGGGACTATCGGCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTA 139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 15730 AGGGACTATCGGCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTA 15789
Query 140 GATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACCTTGGCCG 199
|||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||
Sbjct 15790 GATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCTCCTTAACCG 15849
Query 200 GAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTATTG 259
||||| |||||||||||||||||||||||||||||| ||||||||||
Sbjct 15850 AAAGGTTTGGGTAATCTTGTTAAACTCTGTCGTGCTG-------------GCAATTATTG 15896
Query 260 CTCTTCAACGAGGA 273
||||||||||||||
Sbjct 15897 CTCTTCAACGAGGA 15910
Score = 100 bits (110), Expect = 5e-19
Identities = 63/68 (93%), Gaps = 0/68 (0%)
Strand=Plus/Plus
Query 261 TCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCCTGC 320
|||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||
Sbjct 1 TCTTCAACGAGGAATGCCTAGTAAGCGCAAGTCATCAGCTTGCGTTGATTACGTCCCTGC 60
Query 321 CCTTTGTA 328
| ||||||
Sbjct 61 CTTTTGTA 68
>seq794
Length=388
Score = 145 bits (160), Expect = 1e-32
Identities = 88/93 (95%), Gaps = 0/93 (0%)
Strand=Plus/Minus
Query 20 GAGCGAGACCTTAACCTGCTAAATAGCCAGGCCCGCTTTGGCGGGTCGCCGGCTTCTTAG 79
|| ||||||||||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 93 GAACGAGACCTTAACCTGCTAAATAGCCAGGCTAGCTTTGGCTGGTCGCCGGCTTCTTAG 34
Query 80 AGGGACTATCGGCTCAAGCCGATGGAAGTTTGA 112
|||||||||||||||||||||||||||| ||||
Sbjct 33 AGGGACTATCGGCTCAAGCCGATGGAAGGTTGA 1
>seq11464
Length=3087
Score = 80.6 bits (88), Expect = 5e-13
Identities = 69/83 (83%), Gaps = 2/83 (2%)
Strand=Plus/Minus
Query 156 CGCGCGCTACACTGACAGAGCCAACGAGTTCATCACCTTGGCCGGAAGGTCTGGGTAATC 215
|||| ||||||||| |||| ||||| ||||||| |||| ||| ||| | |||||||||
Sbjct 2345 CGCGTGCTACACTGGCAGAACCAAC-AGTTCATATCCTTAACCGAAAGAT-TGGGTAATC 2288
Query 216 TTGTTAAACTCTGTCGTGCTGGG 238
||||| || ||||||| ||||||
Sbjct 2287 TTGTTGAAGTCTGTCGCGCTGGG 2265
>seq10146
Length=30714
Score = 73.4 bits (80), Expect = 7e-11
Identities = 49/55 (89%), Gaps = 0/55 (0%)
Strand=Plus/Plus
Query 20 GAGCGAGACCTTAACCTGCTAAATAGCCAGGCCCGCTTTGGCGGGTCGCCGGCTT 74
|| ||||||||||||||||||||||||| | | |||||||| ||||||||||||
Sbjct 42 GAACGAGACCTTAACCTGCTAAATAGCCGGCCTAGCTTTGGCTGGTCGCCGGCTT 96
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 947088448256
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |