Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rutstroemia_20sydowiana_20[genbank_20GCA_5F000812895.1_202014-12-31] 11,777 sequences; 51,994,176 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq45 367 2e-99 seq794 145 1e-32 seq11464 80.6 5e-13 seq10146 73.4 7e-11 >seq45 Length=15910 Score = 367 bits (406), Expect = 2e-99 Identities = 232/254 (91%), Gaps = 13/254 (5%) Strand=Plus/Plus Query 20 GAGCGAGACCTTAACCTGCTAAATAGCCAGGCCCGCTTTGGCGGGTCGCCGGCTTCTTAG 79 || ||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| Sbjct 15670 GAACGAGACCTTAACCTGCTAAATAGCCAGGCTAGCTTTGGCTGGTCGCCGGCTTCTTAG 15729 Query 80 AGGGACTATCGGCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTA 139 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 15730 AGGGACTATCGGCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTA 15789 Query 140 GATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACCTTGGCCG 199 |||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||| Sbjct 15790 GATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCTCCTTAACCG 15849 Query 200 GAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTATTG 259 ||||| |||||||||||||||||||||||||||||| |||||||||| Sbjct 15850 AAAGGTTTGGGTAATCTTGTTAAACTCTGTCGTGCTG-------------GCAATTATTG 15896 Query 260 CTCTTCAACGAGGA 273 |||||||||||||| Sbjct 15897 CTCTTCAACGAGGA 15910 Score = 100 bits (110), Expect = 5e-19 Identities = 63/68 (93%), Gaps = 0/68 (0%) Strand=Plus/Plus Query 261 TCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCCTGC 320 |||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||| Sbjct 1 TCTTCAACGAGGAATGCCTAGTAAGCGCAAGTCATCAGCTTGCGTTGATTACGTCCCTGC 60 Query 321 CCTTTGTA 328 | |||||| Sbjct 61 CTTTTGTA 68 >seq794 Length=388 Score = 145 bits (160), Expect = 1e-32 Identities = 88/93 (95%), Gaps = 0/93 (0%) Strand=Plus/Minus Query 20 GAGCGAGACCTTAACCTGCTAAATAGCCAGGCCCGCTTTGGCGGGTCGCCGGCTTCTTAG 79 || ||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| Sbjct 93 GAACGAGACCTTAACCTGCTAAATAGCCAGGCTAGCTTTGGCTGGTCGCCGGCTTCTTAG 34 Query 80 AGGGACTATCGGCTCAAGCCGATGGAAGTTTGA 112 |||||||||||||||||||||||||||| |||| Sbjct 33 AGGGACTATCGGCTCAAGCCGATGGAAGGTTGA 1 >seq11464 Length=3087 Score = 80.6 bits (88), Expect = 5e-13 Identities = 69/83 (83%), Gaps = 2/83 (2%) Strand=Plus/Minus Query 156 CGCGCGCTACACTGACAGAGCCAACGAGTTCATCACCTTGGCCGGAAGGTCTGGGTAATC 215 |||| ||||||||| |||| ||||| ||||||| |||| ||| ||| | ||||||||| Sbjct 2345 CGCGTGCTACACTGGCAGAACCAAC-AGTTCATATCCTTAACCGAAAGAT-TGGGTAATC 2288 Query 216 TTGTTAAACTCTGTCGTGCTGGG 238 ||||| || ||||||| |||||| Sbjct 2287 TTGTTGAAGTCTGTCGCGCTGGG 2265 >seq10146 Length=30714 Score = 73.4 bits (80), Expect = 7e-11 Identities = 49/55 (89%), Gaps = 0/55 (0%) Strand=Plus/Plus Query 20 GAGCGAGACCTTAACCTGCTAAATAGCCAGGCCCGCTTTGGCGGGTCGCCGGCTT 74 || ||||||||||||||||||||||||| | | |||||||| |||||||||||| Sbjct 42 GAACGAGACCTTAACCTGCTAAATAGCCGGCCTAGCTTTGGCTGGTCGCCGGCTT 96 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 947088448256