Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rutstroemia_20sydowiana_20[genbank_20GCA_5F000812895.1_202014-12-31] 11,777 sequences; 51,994,176 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq311 796 0.0 seq45 625 1e-176 >seq311 Length=898 Score = 796 bits (882), Expect = 0.0 Identities = 490/522 (94%), Gaps = 3/522 (1%) Strand=Plus/Minus Query 22 AGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATGGTTTAACAGATGTGC 81 |||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||| Sbjct 898 AGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTGTTGTTTAACAGATGTGC 839 Query 82 CGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATCGGCCCGCGAAGGACC 141 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||| Sbjct 838 CGCCCCAGCCAAACTCCCCACCTGACAATGTCTTCAACCCGGATCGGCCCGCGAAGAACC 779 Query 142 TTAACGCCAGAAAATGGTCGGTGAAGACCAGTTCCGCTTCATTGATTAAGTaaaaaaaCG 201 ||||||| |||| |||| |||||||| ||||| |||||||||||| |||||||||||||| Sbjct 778 TTAACGCTAGAAGATGGGCGGTGAAGCCCAGTGCCGCTTCATTGAATAAGTAAAAAAACG 719 Query 202 ATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGGCTCCCACTTATTCTACACCTCTCAA 261 |||| | ||||||||||||||| |||||| | |||||||| ||||||||| | | Sbjct 718 ATAAAGTTAGTGGTATTTCACTAGCGCCGGA---GCTCCCACCAGTTCTACACCCCATAT 662 Query 262 GTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTC 321 | | |||||||| ||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 661 GACTTTTCACAATGTCAAACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTC 602 Query 322 CGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATC 381 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 601 TGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATC 542 Query 382 TCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAG 441 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 541 TCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAG 482 Query 442 AGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCA 501 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 481 AGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTACTTCACTTTGACATTCA 422 Query 502 GAGCACTGGGCAGAAATCACATTGCGTCAACATCACTTTCTG 543 |||||||||||||||||||||||||||||||| ||||||||| Sbjct 421 GAGCACTGGGCAGAAATCACATTGCGTCAACACCACTTTCTG 380 >seq45 Length=15910 Score = 625 bits (692), Expect = 1e-176 Identities = 400/435 (92%), Gaps = 3/435 (1%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 |||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 4392 CTTTTGTTCTACTGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 4333 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 4332 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCTTCAACCCGGATC 4273 Query 127 GGCCCGCGAAGGACCTTAACGCCAGAAAATGGTCGGTGAAGACCAGTTCCGCTTCATTGA 186 |||||||||||||||||| || |||| ||| | ||| |||||||||||| ||||| Sbjct 4272 AGCCCGCGAAGGACCTTAATGCTAGAAGTTGGGCTTTGACACCCAGTTCCGCTTTATTGA 4213 Query 187 TTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGGCTCCCACTTA 246 ||||||||||||||||||||||||||||||||||| |||| |||||||| || Sbjct 4212 ATAAGTAAAAAAACGATAAGGGTAGTGGTATTTCACCGGCGCTTGC---GCTCCCACCTA 4156 Query 247 TTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTC 306 ||||||||| | | ||| |||||||| ||| ||||||||||||||||||||||||||| Sbjct 4155 TTCTACACCCCCTATGTCTTTTCACAATGTCAAACTAGAGTCAAGCTCAACAGGGTCTTC 4096 Query 307 TTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATA 366 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 4095 TTTCCCCGCTGATTCTGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATA 4036 Query 367 GGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATT 426 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 4035 GGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATT 3976 Query 427 TGGCTACCTTAAGAG 441 ||||||||||||||| Sbjct 3975 TGGCTACCTTAAGAG 3961 Score = 178 bits (196), Expect = 4e-42 Identities = 101/103 (98%), Gaps = 0/103 (0%) Strand=Plus/Minus Query 441 GAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTC 500 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 3665 GAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTACTTCACTTTGACATTC 3606 Query 501 AGAGCACTGGGCAGAAATCACATTGCGTCAACATCACTTTCTG 543 ||||||||||||||||||||||||||||||||| ||||||||| Sbjct 3605 AGAGCACTGGGCAGAAATCACATTGCGTCAACACCACTTTCTG 3563 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1635007422496