Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rutstroemia_20sydowiana_20[genbank_20GCA_5F000812895.1_202014-12-31]
11,777 sequences; 51,994,176 total letters
Query= AAMG01002199.1
Length=543
Score E
Sequences producing significant alignments: (Bits) Value
seq311 796 0.0
seq45 625 1e-176
>seq311
Length=898
Score = 796 bits (882), Expect = 0.0
Identities = 490/522 (94%), Gaps = 3/522 (1%)
Strand=Plus/Minus
Query 22 AGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATGGTTTAACAGATGTGC 81
|||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||
Sbjct 898 AGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTGTTGTTTAACAGATGTGC 839
Query 82 CGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATCGGCCCGCGAAGGACC 141
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 838 CGCCCCAGCCAAACTCCCCACCTGACAATGTCTTCAACCCGGATCGGCCCGCGAAGAACC 779
Query 142 TTAACGCCAGAAAATGGTCGGTGAAGACCAGTTCCGCTTCATTGATTAAGTaaaaaaaCG 201
||||||| |||| |||| |||||||| ||||| |||||||||||| ||||||||||||||
Sbjct 778 TTAACGCTAGAAGATGGGCGGTGAAGCCCAGTGCCGCTTCATTGAATAAGTAAAAAAACG 719
Query 202 ATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGGCTCCCACTTATTCTACACCTCTCAA 261
|||| | ||||||||||||||| |||||| | |||||||| ||||||||| | |
Sbjct 718 ATAAAGTTAGTGGTATTTCACTAGCGCCGGA---GCTCCCACCAGTTCTACACCCCATAT 662
Query 262 GTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTC 321
| | |||||||| ||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 GACTTTTCACAATGTCAAACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTC 602
Query 322 CGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATC 381
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 TGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATC 542
Query 382 TCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAG 441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 TCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAG 482
Query 442 AGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCA 501
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 481 AGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTACTTCACTTTGACATTCA 422
Query 502 GAGCACTGGGCAGAAATCACATTGCGTCAACATCACTTTCTG 543
|||||||||||||||||||||||||||||||| |||||||||
Sbjct 421 GAGCACTGGGCAGAAATCACATTGCGTCAACACCACTTTCTG 380
>seq45
Length=15910
Score = 625 bits (692), Expect = 1e-176
Identities = 400/435 (92%), Gaps = 3/435 (1%)
Strand=Plus/Minus
Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66
|||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4392 CTTTTGTTCTACTGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 4333
Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 4332 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCTTCAACCCGGATC 4273
Query 127 GGCCCGCGAAGGACCTTAACGCCAGAAAATGGTCGGTGAAGACCAGTTCCGCTTCATTGA 186
|||||||||||||||||| || |||| ||| | ||| |||||||||||| |||||
Sbjct 4272 AGCCCGCGAAGGACCTTAATGCTAGAAGTTGGGCTTTGACACCCAGTTCCGCTTTATTGA 4213
Query 187 TTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGGCTCCCACTTA 246
||||||||||||||||||||||||||||||||||| |||| |||||||| ||
Sbjct 4212 ATAAGTAAAAAAACGATAAGGGTAGTGGTATTTCACCGGCGCTTGC---GCTCCCACCTA 4156
Query 247 TTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTC 306
||||||||| | | ||| |||||||| ||| |||||||||||||||||||||||||||
Sbjct 4155 TTCTACACCCCCTATGTCTTTTCACAATGTCAAACTAGAGTCAAGCTCAACAGGGTCTTC 4096
Query 307 TTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATA 366
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4095 TTTCCCCGCTGATTCTGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATA 4036
Query 367 GGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATT 426
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4035 GGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATT 3976
Query 427 TGGCTACCTTAAGAG 441
|||||||||||||||
Sbjct 3975 TGGCTACCTTAAGAG 3961
Score = 178 bits (196), Expect = 4e-42
Identities = 101/103 (98%), Gaps = 0/103 (0%)
Strand=Plus/Minus
Query 441 GAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTC 500
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 3665 GAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTACTTCACTTTGACATTC 3606
Query 501 AGAGCACTGGGCAGAAATCACATTGCGTCAACATCACTTTCTG 543
||||||||||||||||||||||||||||||||| |||||||||
Sbjct 3605 AGAGCACTGGGCAGAAATCACATTGCGTCAACACCACTTTCTG 3563
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1635007422496
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |