Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rutstroemia_20sydowiana_20[genbank_20GCA_5F000812895.1_202014-12-31] 11,777 sequences; 51,994,176 total letters Query= AAMG01002236.1 Length=287 Score E Sequences producing significant alignments: (Bits) Value seq45 284 2e-74 >seq45 Length=15910 Score = 284 bits (314), Expect = 2e-74 Identities = 236/281 (84%), Gaps = 7/281 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||| || |||||| ||||||||||||||||||||||||| ||||||| Sbjct 5431 GTACGAGAGGAACCGCTGA-TTCAGA-TAATTGGTTTTTGCGGCTGTCTGACAAGGCAGT 5488 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 5489 GCCGCGAAGCTACCATCTGCTGGATAATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 5548 Query 121 GAACGGGGTGATTCTCTCCTGCACATCGTAGTCGGATACGAATAGG-CTTCGGCCCCGAA 179 ||| | ||||||| || ||||||||||||||||||||||||| || ||||| ||| Sbjct 5549 GAAAGCGGTGATTTATACCCACACATCGTAGTCGGATACGAATAGGCCTATGGCCCTGAA 5608 Query 180 CCTTAGCAGGCCGGCAACGGGCGTC--CCGCGGAAGCGCGGGGCGCTCAGCTGGCGGATT 237 |||||| || |||||| | | || | | || | | || | | ||||| || || Sbjct 5609 TCTTAGCTGGTTGGCAAC-GCCATCATAAGGGAAAACTTGTGGTGGT-AGCTGACGTCTT 5666 Query 238 GCAATTTCACCATGCGCAGGGATAAATCCTTTGCAGACGAC 278 ||||||| |||||||| ||| ||||||||||||| ||||| Sbjct 5667 GCAATTTTACCATGCGTGGGGTTAAATCCTTTGCATACGAC 5707 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 819106537728