Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rutstroemia_20sydowiana_20[genbank_20GCA_5F000812895.1_202014-12-31] 11,777 sequences; 51,994,176 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq10763 327 9e-85 seq10338 114 1e-20 seq5810 113 4e-20 >seq10763 Length=10051 Score = 327 bits (362), Expect = 9e-85 Identities = 672/990 (68%), Gaps = 18/990 (2%) Strand=Plus/Minus Query 65813 TCGGCCAGACCTTGAACTCCAATACCGATGGGACGATGACGCAAATTGGAACGTCTCGCC 65872 || || ||||||||||| |||| | | || || |||||||| |||||| | ||| || Sbjct 5438 TCAGCAAGACCTTGAACACCAACAGCAATAGGTCGATGACGGAAATTGCTTCTTCTGGCT 5379 Query 65873 TCAGGTACAGGGTAGTAATTGATATCGATAATGCGATTCAAATTGCGTGTCACCA-CATG 65931 || || || |||||||||||||||||||| ||||| || | || || || | || Sbjct 5378 TCTTCGACGGGATAGTAATTGATATCGATAATCTTGTTCAAGTTTC-TGACAACAACTTG 5320 Query 65932 CACGATA-CGTCGCAATTGTTCGAAATCAAAATGTTTAGGACGATCGGGAGTGCCGGACA 65990 |||| ||| | | | || ||||||| || ||| | |||| || | Sbjct 5319 AACGACCTCGT-GAAGCTTTTGGAAATCATAA-GTT-----CCCTCGGCCATGTTG---- 5271 Query 65991 CCACAAACTTGGGAAGGGCAAGAGATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGG 66050 ||||| | || || |||| ||| || | || ||| ||| | ||| ||||| || | Sbjct 5270 --ACAAAGGTTGGGAGAGCAATAGAAGCCAAATTACAGCAAGCAACCTCATCAGGTGCAG 5213 Query 66051 TATACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGAT 66110 || ||||| ||||| ||||||| || || ||| || ||||| | ||||| ||||| Sbjct 5212 AGTATTCGACGATTTCCGTGCACAAGTTGGAGCTGCGGATTGTGCCGAGATTCTTTTGAT 5153 Query 66111 TACTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTGGG 66170 | ||||| ||||| ||||| ||||| | |||| | || | || |||||| || | Sbjct 5152 TGCTCTTTTTGTTGCAAGCATCTTTGTAAAGCATGAAAGGGTTTCCTGTCTCAGTCTGTG 5093 Query 66171 ACTCAATGATGGCGTGCCAAAGAGCGCGTGCCTTCACCGTACGTACCGCCCTACCTTTGC 66230 ||| | ||| | | |||||| | ||||| | || | ||| ||| | | ||| Sbjct 5092 CCTCGAGGATAGAATACCAAAGCTTTTGAGCCTTGATAGT-CTTACGGCCTTTACCTTGT 5034 Query 66231 GT-TCGTAATGTTCGTAGAGGTGTTCGAAGGATTCACCCCATACTTCGGACAGACATGGA 66289 | |||||| || || || ||| || ||||| | || || | || | ||| Sbjct 5033 TTCTCGTAACCCTCATAAAGAGCTTCAAACTCATCACCATAGACATCAGCCAAGCCAGGA 4974 Query 66290 CACTTGTGTGGACACATCAGCGACCAATCACCATCCTGTTCTACACGACGCATAAATAGA 66349 || | || || ||||| || | |||||| || | || ||| ||||| ||| || ||| Sbjct 4973 CATTCGTTGGGGCACATGAGTGTCCAATCTCCGTTCTTTTCAACACGCTTCATGAAGAGA 4914 Query 66350 TCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAATGCCGTGATTT 66409 || || ||||||||||| || ||||| ||||||||||| ||||| | || ||||| Sbjct 4913 TCTGGAATCCAGAGGGCATAAAAGAGGTCGCGTGCTCGAACTTCCTCCTTTCCATGATTC 4854 Query 66410 TTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTAGATGGCGAAC 66469 || || | || | |||||||||| || |||||||||||||| |||||||||||||| Sbjct 4853 TTTCGGAGATCCAAAAACTCAAAGACATCCGCATGCCATGGTTCAAGGTAGATGGCGAAT 4794 Query 66470 GAGCCCATACGTTTGCCGCCACCTTGGTCGACGTAGCGAGCGACATTGTTGAAGACACGC 66529 | || || ||| |||||||| ||||| || | |||| ||||||||| || || Sbjct 4793 GCACCAGGGCGCTTGTTACCACCTTGATCGACATATCTAGCGGTATTGTTGAAAACTCGA 4734 Query 66530 AACATCGGTACGAGCCCGTTAGATTTGCCATTGGTGCCGTCGATGGGGGATCCTCGTGCC 66589 | ||| || |||| |||||||| || ||||| ||||| | ||| | || || Sbjct 4733 AGCATAGGAACGATACCGTTAGAATTTCCATTTGTGCCAGCAATGTATGCACCAGTAGCA 4674 Query 66590 CGTATATCGTGAACATTCAGACCAATACCACCGGCCGTCTTCGAGATGGCAGCACAATCG 66649 || || ||| | || ||||||||||| || || |||| || || |||||| Sbjct 4673 CGAATTCTGTGGATGTTGAGACCAATACCTCCAGCATTCTTAGAAATCATGGCACAAATC 4614 Query 66650 GCCACTGTCCGGAATATGCCGTCAATGGAGTCACCCTTGATGGTCAGGAGGTAGCATGAA 66709 || || | || || ||||| || |||| ||| | |||| |||||||| Sbjct 4613 TTCAAAGTATCATAAATTCCATCAATACTATCCTCCTTCATGTCAATGAGGAAGCATGAA 4554 Query 66710 CTAAGTTGGGGTTTGGGTGTGGCGGCCGAGAAGAGGGTGGGTGTAGCGTGCGTAAAGTAA 66769 |||||||| || ||||| | || |||||||| || || | |||||| |||||||| Sbjct 4553 GAAAGTTGGGCTTGTGGTGTACCCGCGGAGAAGAGTGTTGGAGAAGCGTGTGTAAAGTAT 4494 Query 66770 TGGCGAGACATGTAATTGTACGTCTCGATG 66799 | | ||||| | ||||| || || ||| Sbjct 4493 TTGTTGGACATTAAGTTGTAGGTTTCAATG 4464 >seq10338 Length=29807 Score = 114 bits (126), Expect = 1e-20 Identities = 204/295 (69%), Gaps = 7/295 (2%) Strand=Plus/Plus Query 61087 ATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTG 61146 ||||||| |||||||| ||||| || || || |||||||| | || ||| |||| ||| Sbjct 12536 ATTTGGCAGATGTACAAGAAGGCTGAGGCATCTTTCTGGACCGCAGAAGAGATCGACTTG 12595 Query 61147 TCCAAAGACATGAATGACTGGGA-----GCGTTTATCGAGCGGTGAACAACATTTCATTA 61201 || || || | | |||||| | | | || || || ||| | | ||| | Sbjct 12596 TCAAAGGATCTTCACGACTGGAACAACAGACTCAAT-GA-CGATGAGCGTTACTTCGTCT 12653 Query 61202 AACATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAAC 61261 || || | || ||||| ||||| || || || || ||||||||||| | | |||| Sbjct 12654 CTCACGTCCTCGCATTCTTCGCCGCATCTGATGGAATTGTCAATGAGAACCTTGTCGAAC 12713 Query 61262 GTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCA 61321 ||||| ||||| || | | || || || || |||||||| |||||||| | Sbjct 12714 GTTTCAGTGGTGAGGTCCAGATCCCTGAAGCACGATGCTTCTACGGTTTCCAGATCATGA 12773 Query 61322 TGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGA 61376 ||||||| | |||||||| | ||| | ||||||||||||| ||||||| ||| Sbjct 12774 TGGAGAACATTCACTCGGAAACATACTCTCTTCTCATCGATACATACATCAAGGA 12828 >seq5810 Length=707 Score = 113 bits (124), Expect = 4e-20 Identities = 145/200 (73%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 65993 ACAAACTTGGGAAGGGCAAGAGATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGGTA 66052 ||||| |||| ||||| || || || |||||||| ||||| | ||| ||||| || | Sbjct 675 ACAAAGGTGGGGAGGGCGAGGGAAGCCAGGTTGCAAACAGCCACCTCATCAGGGGCACTG 616 Query 66053 TACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGATTA 66112 ||||| | || || |||||||| ||| || ||| || || |||| |||| || ||| Sbjct 615 TACTCAATGATCTCAGTGCACAGGTTAGAGCTGCGAATAGTACCCAGGTTCTTCTGGTTA 556 Query 66113 CTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTGGGAC 66172 ||||| | ||||| ||||||||||| | |||| | || | || ||||| |||| | Sbjct 555 CTCTTCCTGTTGCAGGCATCCTTGTAGAGCATGAAGGGGTTACCAGTCTCGGTCTGGGCC 496 Query 66173 TCAATGATGGCGTGCCAAAG 66192 || | ||||| | ||| || Sbjct 495 TCGAGAATGGCATACCAGAG 476 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397510936195280