Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarocladium_20oryzae_20[genbank_20GCA_5F001605845.1_202016-04-01] 5,856 sequences; 32,778,109 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq3561 242 6e-62 seq5200 170 3e-40 seq3439 93.3 7e-17 seq1000 93.3 7e-17 >seq3561 Length=1416 Score = 242 bits (268), Expect = 6e-62 Identities = 175/198 (88%), Gaps = 3/198 (2%) Strand=Plus/Plus Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCC 121 |||||||||||||||||||||| | |||| || ||| | |||||||||||||||||||| Sbjct 1 CCTGTTATTGCCTCAAACTTCCTTCGGCTTGA-GCCGAAAGTCCCTCTAAGAAGCCAGCG 59 Query 122 ACCAACCATAGTCGATG-GGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTA 180 | || || | ||| |||||||||||||||||||||||||||||||||||| ||||| Sbjct 60 CACTGCCGGAG-CAATGCGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGCAATTA 118 Query 181 ACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGA 240 | ||||||| |||| |||||||||||||||||||||||||||||||||| | |||||||| Sbjct 119 AGCAGACAAGTCACCCCACCAACTAAGAACGGCCATGCACCACCACCCACAAAATCAAGA 178 Query 241 AAGAGCTATCAATCTGTC 258 ||||||| |||||||||| Sbjct 179 AAGAGCTCTCAATCTGTC 196 >seq5200 Length=439 Score = 170 bits (188), Expect = 3e-40 Identities = 110/119 (92%), Gaps = 1/119 (1%) Strand=Plus/Plus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| || | ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 303 ACTCGCTGACCCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 362 Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGC 120 |||||||||||||||||||||| | |||| | |||| | |||||||||||||||||||| Sbjct 363 CCTGTTATTGCCTCAAACTTCCTTCGGCTTG-AGCCGAAAGTCCCTCTAAGAAGCCAGC 420 >seq3439 Length=361 Score = 93.3 bits (102), Expect = 7e-17 Identities = 56/59 (95%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAG 60 ||||| || | |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 59 ACTCGCTGCCCCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAG 1 >seq1000 Length=361 Score = 93.3 bits (102), Expect = 7e-17 Identities = 56/59 (95%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAG 60 ||||| || | |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 303 ACTCGCTGACCCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAG 361 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796754797536