Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sarocladium_20oryzae_20[genbank_20GCA_5F001605845.1_202016-04-01]
5,856 sequences; 32,778,109 total letters
Query= AAMG01000911.1
Length=280
Score E
Sequences producing significant alignments: (Bits) Value
seq3561 242 6e-62
seq5200 170 3e-40
seq3439 93.3 7e-17
seq1000 93.3 7e-17
>seq3561
Length=1416
Score = 242 bits (268), Expect = 6e-62
Identities = 175/198 (88%), Gaps = 3/198 (2%)
Strand=Plus/Plus
Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCC 121
|||||||||||||||||||||| | |||| || ||| | ||||||||||||||||||||
Sbjct 1 CCTGTTATTGCCTCAAACTTCCTTCGGCTTGA-GCCGAAAGTCCCTCTAAGAAGCCAGCG 59
Query 122 ACCAACCATAGTCGATG-GGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTA 180
| || || | ||| |||||||||||||||||||||||||||||||||||| |||||
Sbjct 60 CACTGCCGGAG-CAATGCGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGCAATTA 118
Query 181 ACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGA 240
| ||||||| |||| |||||||||||||||||||||||||||||||||| | ||||||||
Sbjct 119 AGCAGACAAGTCACCCCACCAACTAAGAACGGCCATGCACCACCACCCACAAAATCAAGA 178
Query 241 AAGAGCTATCAATCTGTC 258
||||||| ||||||||||
Sbjct 179 AAGAGCTCTCAATCTGTC 196
>seq5200
Length=439
Score = 170 bits (188), Expect = 3e-40
Identities = 110/119 (92%), Gaps = 1/119 (1%)
Strand=Plus/Plus
Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61
||||| || | |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 303 ACTCGCTGACCCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 362
Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGC 120
|||||||||||||||||||||| | |||| | |||| | ||||||||||||||||||||
Sbjct 363 CCTGTTATTGCCTCAAACTTCCTTCGGCTTG-AGCCGAAAGTCCCTCTAAGAAGCCAGC 420
>seq3439
Length=361
Score = 93.3 bits (102), Expect = 7e-17
Identities = 56/59 (95%), Gaps = 0/59 (0%)
Strand=Plus/Minus
Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAG 60
||||| || | ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 59 ACTCGCTGCCCCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAG 1
>seq1000
Length=361
Score = 93.3 bits (102), Expect = 7e-17
Identities = 56/59 (95%), Gaps = 0/59 (0%)
Strand=Plus/Plus
Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAG 60
||||| || | ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 303 ACTCGCTGACCCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAG 361
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 796754797536
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |