Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sarocladium_20oryzae_20[genbank_20GCA_5F001605845.1_202016-04-01]
5,856 sequences; 32,778,109 total letters
Query= AAMG01002244.1
Length=504
Score E
Sequences producing significant alignments: (Bits) Value
seq3561 747 0.0
seq1927 250 8e-64
seq693 120 9e-25
>seq3561
Length=1416
Score = 747 bits (828), Expect = 0.0
Identities = 469/504 (93%), Gaps = 1/504 (0%)
Strand=Plus/Plus
Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60
|||||||||||||||||||| ||| |||| ||||||||||||||||||||||||||||||
Sbjct 909 GTACTCATTCCAATTACAAGGCCCGAAAGGGCCCTGTATCAGTATTTATTGTCACTACCT 968
Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120
||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 969 CCCCGAGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTAGTAGCCGTT 1028
Query 121 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTA 180
||||||||||| ||||||| |||| |||||| | ||||||||||||| |||||| |
Sbjct 1029 TCTCAGGCTCCTTCTCCGGGGTCGAGCCCTAACCCTCCGTTACCCGTTGCAACCATGTTT 1088
Query 181 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCT 240
||||| || || | |||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1089 GGCCAATACCCAAACATCGAAAGTTGATAGGGAAGAAATTTGAATGAACCATCGCCGGCG 1148
Query 241 CAAGGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGGAGCCCCGAAGGGCGTTGGT 300
||||||| |||||||||| |||||| |||||||||||| |||||||||||||| |||||
Sbjct 1149 CAAGGCCGTGCGATTCGTATAGTTATCATGAATCACCAAAGAGCCCCGAAGGGCATTGGT 1208
Query 301 TTTTTATCTAATAAATACACCCCTTCCGAAGTCGGGGTTTTTAGCATGTATTAGCTCTAG 360
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1209 TTTGTATCTAATAAATACACCCCTTCCGAAGTCGGGGTTTTTAGCATGTATTAGCTCTAG 1268
Query 361 AATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGATTTAATGA 420
|||||||||||||||||| ||||||||| ||||||||||||||||||||| || ||||||
Sbjct 1269 AATTACCACGGTTATCCAAGTAGTAAGGCACTATCAAATAAACGATAACTTATATAATGA 1328
Query 421 GCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCATGGCTTAATCTTTG 480
||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1329 GCCATTCGCAGTTTCGCTGTATA-ATTGCTTATACTTAGACATGCATGGCTTAATCTTTG 1387
Query 481 AGACAAGCATATGACTACTGGCAG 504
||||||||||||||||||||||||
Sbjct 1388 AGACAAGCATATGACTACTGGCAG 1411
>seq1927
Length=222
Score = 250 bits (276), Expect = 8e-64
Identities = 180/208 (87%), Gaps = 0/208 (0%)
Strand=Plus/Minus
Query 30 AGCCCTGTATCAGTATTTATTGTCACTACCTCCCCGTGTCGGGATTGGGTAATTTGCGCG 89
|| ||||||| ||||| | ||||||||||||||| ||||||| |||||||||||||||
Sbjct 222 AGTCCTGTATTGTTATTTTTCGTCACTACCTCCCCGGGTCGGGAGTGGGTAATTTGCGCG 163
Query 90 CCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCC 149
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 162 CCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCC 103
Query 150 TAATTCCCCGTTACCCGTTGATACCATGGTAGGCCACTATCCTACCATCGAAAGTTGATA 209
| ||||||||| |||||| | |||||| ||||| |||||||||||||||||||
Sbjct 102 TGATTCCCCGTCACCCGTGGTCACCATGTTAGGCACGGCGACTACCATCGAAAGTTGATA 43
Query 210 GGGCAGAAATTTGAATGAACCATCGCCG 237
||||||| || ||||| | ||||||
Sbjct 42 GGGCAGACGTTCGAATGGGTCGTCGCCG 15
>seq693
Length=355
Score = 120 bits (132), Expect = 9e-25
Identities = 71/73 (97%), Gaps = 1/73 (1%)
Strand=Plus/Minus
Query 432 TTTCACTGTATAGATTGCTTATACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATA 491
|||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 355 TTTCGCTGTATA-ATTGCTTATACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATA 297
Query 492 TGACTACTGGCAG 504
|||||||||||||
Sbjct 296 TGACTACTGGCAG 284
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1510311550976
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |