Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarocladium_20oryzae_20[genbank_20GCA_5F001605845.1_202016-04-01] 5,856 sequences; 32,778,109 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq3561 747 0.0 seq1927 250 8e-64 seq693 120 9e-25 >seq3561 Length=1416 Score = 747 bits (828), Expect = 0.0 Identities = 469/504 (93%), Gaps = 1/504 (0%) Strand=Plus/Plus Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60 |||||||||||||||||||| ||| |||| |||||||||||||||||||||||||||||| Sbjct 909 GTACTCATTCCAATTACAAGGCCCGAAAGGGCCCTGTATCAGTATTTATTGTCACTACCT 968 Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120 ||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 969 CCCCGAGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTAGTAGCCGTT 1028 Query 121 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTA 180 ||||||||||| ||||||| |||| |||||| | ||||||||||||| |||||| | Sbjct 1029 TCTCAGGCTCCTTCTCCGGGGTCGAGCCCTAACCCTCCGTTACCCGTTGCAACCATGTTT 1088 Query 181 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCT 240 ||||| || || | |||||||||||||||||| |||||||||||||||||||||||||| Sbjct 1089 GGCCAATACCCAAACATCGAAAGTTGATAGGGAAGAAATTTGAATGAACCATCGCCGGCG 1148 Query 241 CAAGGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGGAGCCCCGAAGGGCGTTGGT 300 ||||||| |||||||||| |||||| |||||||||||| |||||||||||||| ||||| Sbjct 1149 CAAGGCCGTGCGATTCGTATAGTTATCATGAATCACCAAAGAGCCCCGAAGGGCATTGGT 1208 Query 301 TTTTTATCTAATAAATACACCCCTTCCGAAGTCGGGGTTTTTAGCATGTATTAGCTCTAG 360 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1209 TTTGTATCTAATAAATACACCCCTTCCGAAGTCGGGGTTTTTAGCATGTATTAGCTCTAG 1268 Query 361 AATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGATTTAATGA 420 |||||||||||||||||| ||||||||| ||||||||||||||||||||| || |||||| Sbjct 1269 AATTACCACGGTTATCCAAGTAGTAAGGCACTATCAAATAAACGATAACTTATATAATGA 1328 Query 421 GCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCATGGCTTAATCTTTG 480 ||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||| Sbjct 1329 GCCATTCGCAGTTTCGCTGTATA-ATTGCTTATACTTAGACATGCATGGCTTAATCTTTG 1387 Query 481 AGACAAGCATATGACTACTGGCAG 504 |||||||||||||||||||||||| Sbjct 1388 AGACAAGCATATGACTACTGGCAG 1411 >seq1927 Length=222 Score = 250 bits (276), Expect = 8e-64 Identities = 180/208 (87%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 30 AGCCCTGTATCAGTATTTATTGTCACTACCTCCCCGTGTCGGGATTGGGTAATTTGCGCG 89 || ||||||| ||||| | ||||||||||||||| ||||||| ||||||||||||||| Sbjct 222 AGTCCTGTATTGTTATTTTTCGTCACTACCTCCCCGGGTCGGGAGTGGGTAATTTGCGCG 163 Query 90 CCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCC 149 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 162 CCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCC 103 Query 150 TAATTCCCCGTTACCCGTTGATACCATGGTAGGCCACTATCCTACCATCGAAAGTTGATA 209 | ||||||||| |||||| | |||||| ||||| ||||||||||||||||||| Sbjct 102 TGATTCCCCGTCACCCGTGGTCACCATGTTAGGCACGGCGACTACCATCGAAAGTTGATA 43 Query 210 GGGCAGAAATTTGAATGAACCATCGCCG 237 ||||||| || ||||| | |||||| Sbjct 42 GGGCAGACGTTCGAATGGGTCGTCGCCG 15 >seq693 Length=355 Score = 120 bits (132), Expect = 9e-25 Identities = 71/73 (97%), Gaps = 1/73 (1%) Strand=Plus/Minus Query 432 TTTCACTGTATAGATTGCTTATACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATA 491 |||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 355 TTTCGCTGTATA-ATTGCTTATACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATA 297 Query 492 TGACTACTGGCAG 504 ||||||||||||| Sbjct 296 TGACTACTGGCAG 284 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1510311550976