Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20glacialis_20[genbank_20GCA_5F002162575.1_202017-05-31]
623 sequences; 41,098,534 total letters
Query= AAMG01002236.1
Length=287
Score E
Sequences producing significant alignments: (Bits) Value
seq24 168 1e-39
seq23 167 4e-39
>seq24
Length=546725
Score = 168 bits (186), Expect = 1e-39
Identities = 106/112 (95%), Gaps = 2/112 (2%)
Strand=Plus/Minus
Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60
|||||||||||||||| || |||||| |||||||||||||||||||||||| |||||||
Sbjct 345062 GTACGAGAGGAACCGCTGA-TTCAGA-TAATTGGTTTTTGCGGCTGTCTGAGAAGGCAGT 345005
Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAAT 112
||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 345004 GCCGCGAAGCTACCATCTGCTGGATAATGGCTGAACGCCTCTAAGTCAGAAT 344953
>seq23
Length=668645
Score = 167 bits (184), Expect = 4e-39
Identities = 208/280 (74%), Gaps = 4/280 (1%)
Strand=Plus/Minus
Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60
|||| | ||||||| | |||||||| ||||||| |||||||||| ||| || | || |
Sbjct 612404 GTACAAAAGGAACCACT-AATTCAGA-TAATTGGGTTTTGCGGCTATCTAACAAAACAAT 612347
Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCT-AAGTCAGAATCCATGCC 119
|| |||||||||||||||||||||| || |||||||||||| || ||||||||||| ||
Sbjct 612346 GCTGCGAAGCTACCATCTGCTGGATAATAACTGAACGCCTCTAAAATCAGAATCCATACC 612287
Query 120 AGAACGGGGTGATTCTCTCCTGCACATCGTAGTCGGATACGAAT-AGGCTTCGGCCCCGA 178
|||| |||||| || ||||||||| |||||||||||| || ||| ||||| ||
Sbjct 612286 AGAAAACAGTGATTTATACCCACACATCGTAATCGGATACGAATAAGCCTTTGGCCCTGA 612227
Query 179 ACCTTAGCAGGCCGGCAACGGGCGTCCCGCGGAAGCGCGGGGCGCTCAGCTGGCGGATTG 238
| |||||| ||| |||| | | | ||| | | | | | || || |||
Sbjct 612226 ATCTTAGCTGGCTAATAACGATCCTATTGAAGAAACTCTTTAGGATTAACTAACGTTTTG 612167
Query 239 CAATTTCACCATGCGCAGGGATAAATCCTTTGCAGACGAC 278
|||||| || || | |||| | ||||||||||| || ||
Sbjct 612166 CAATTTTACAATACATAGGGTTGAATCCTTTGCATACAAC 612127
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 819195055872
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |