Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F001465935.1_202015-12- 14] 257 sequences; 43,359,131 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq256 361 9e-98 seq195 361 9e-98 seq225 77.0 5e-12 seq1 77.0 5e-12 >seq256 Length=119637 Score = 361 bits (400), Expect = 9e-98 Identities = 235/257 (91%), Gaps = 1/257 (0%) Strand=Plus/Minus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 48236 ACTCGTTGGCTCTGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 48177 Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCC 121 |||||||||||||||||||||||| |||| || ||| ||||||||||||||||||| || Sbjct 48176 CCTGTTATTGCCTCAAACTTCCATCGGCTTGA-GCCGATAGTCCCTCTAAGAAGCCGGCG 48118 Query 122 ACCAACCATAGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAA 181 |||| ||| || ||||||||||||||||||||||||||||||||||| |||||| Sbjct 48117 ACCAGCCAAAGCTAGCCTGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGCAATTAA 48058 Query 182 CCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAA 241 ||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| Sbjct 48057 GCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCACAAAATCAAGAA 47998 Query 242 AGAGCTATCAATCTGTC 258 |||||| |||||||||| Sbjct 47997 AGAGCTCTCAATCTGTC 47981 >seq195 Length=609032 Score = 361 bits (400), Expect = 9e-98 Identities = 235/257 (91%), Gaps = 1/257 (0%) Strand=Plus/Plus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 438462 ACTCGTTGGCTCTGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 438521 Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCC 121 |||||||||||||||||||||||| |||| || ||| ||||||||||||||||||| || Sbjct 438522 CCTGTTATTGCCTCAAACTTCCATCGGCTTGA-GCCGATAGTCCCTCTAAGAAGCCGGCG 438580 Query 122 ACCAACCATAGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAA 181 |||| ||| || ||||||||||||||||||||||||||||||||||| |||||| Sbjct 438581 ACCAGCCAAAGCTAGCCTGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGCAATTAA 438640 Query 182 CCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAA 241 ||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| Sbjct 438641 GCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCACAAAATCAAGAA 438700 Query 242 AGAGCTATCAATCTGTC 258 |||||| |||||||||| Sbjct 438701 AGAGCTCTCAATCTGTC 438717 >seq225 Length=1386636 Score = 77.0 bits (84), Expect = 5e-12 Identities = 42/42 (100%), Gaps = 0/42 (0%) Strand=Plus/Minus Query 22 TAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACC 63 |||||||||||||||||||||||||||||||||||||||||| Sbjct 1119383 TAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACC 1119342 >seq1 Length=1211447 Score = 77.0 bits (84), Expect = 5e-12 Identities = 42/42 (100%), Gaps = 0/42 (0%) Strand=Plus/Plus Query 22 TAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACC 63 |||||||||||||||||||||||||||||||||||||||||| Sbjct 822313 TAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACC 822354 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796798016217