Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F001465945.1_202015-12- 14] 231 sequences; 42,266,283 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq159 269 4e-70 seq171 77.0 5e-12 seq209 75.2 2e-11 >seq159 Length=322345 Score = 269 bits (298), Expect = 4e-70 Identities = 199/228 (87%), Gaps = 3/228 (1%) Strand=Plus/Plus Query 2 TACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTCC 61 |||||| |||||||||||| ||||||| |||| ||||||| ||||||||||| ||| || Sbjct 282285 TACAAAAGGCAGGGACGTAATCAACGCAAGCT-GATGACTTGCGCTTACTAGTCATT-CC 282342 Query 62 TCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCA-AAGATTA 120 |||||||||| ||| |||||||||| |||||||||| ||||| | ||| | ||||||| Sbjct 282343 TCGTTGAAGAGCAATAATTGCAATGCTCTATCCCCAGCACGACAGAGTTTAACAAGATTA 282402 Query 121 CCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGG 180 ||| ||||| |||| ||||| ||| |||||||| | |||||||||||||||||||| Sbjct 282403 CCCAGACCTTTCGGTCAAGGAGATGAACTCGTTGGCTCTGTCAGTGTAGCGCGCGTGCGG 282462 Query 181 CCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCC 228 |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 282463 CCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCC 282510 >seq171 Length=572929 Score = 77.0 bits (84), Expect = 5e-12 Identities = 42/42 (100%), Gaps = 0/42 (0%) Strand=Plus/Plus Query 167 TAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACC 208 |||||||||||||||||||||||||||||||||||||||||| Sbjct 453684 TAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACC 453725 >seq209 Length=87485 Score = 75.2 bits (82), Expect = 2e-11 Identities = 60/71 (85%), Gaps = 1/71 (1%) Strand=Plus/Plus Query 58 TTCCTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCA-AAG 116 |||||||||||||| ||| |||||||||| |||||||||| ||||| | ||| | ||| Sbjct 3 TTCCTCGTTGAAGAGCAATAATTGCAATGCTCTATCCCCAGCACGACAGAGTTTAACAAG 62 Query 117 ATTACCCGGAC 127 ||||||| ||| Sbjct 63 ATTACCCAGAC 73 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751998317165