Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F001465945.1_202015-12-
14] 231 sequences; 42,266,283 total letters
Query= AAMG01000185.1
Length=266
Score E
Sequences producing significant alignments: (Bits) Value
seq159 269 4e-70
seq171 77.0 5e-12
seq209 75.2 2e-11
>seq159
Length=322345
Score = 269 bits (298), Expect = 4e-70
Identities = 199/228 (87%), Gaps = 3/228 (1%)
Strand=Plus/Plus
Query 2 TACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTCC 61
|||||| |||||||||||| ||||||| |||| ||||||| ||||||||||| ||| ||
Sbjct 282285 TACAAAAGGCAGGGACGTAATCAACGCAAGCT-GATGACTTGCGCTTACTAGTCATT-CC 282342
Query 62 TCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCA-AAGATTA 120
|||||||||| ||| |||||||||| |||||||||| ||||| | ||| | |||||||
Sbjct 282343 TCGTTGAAGAGCAATAATTGCAATGCTCTATCCCCAGCACGACAGAGTTTAACAAGATTA 282402
Query 121 CCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGG 180
||| ||||| |||| ||||| ||| |||||||| | ||||||||||||||||||||
Sbjct 282403 CCCAGACCTTTCGGTCAAGGAGATGAACTCGTTGGCTCTGTCAGTGTAGCGCGCGTGCGG 282462
Query 181 CCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCC 228
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 282463 CCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCC 282510
>seq171
Length=572929
Score = 77.0 bits (84), Expect = 5e-12
Identities = 42/42 (100%), Gaps = 0/42 (0%)
Strand=Plus/Plus
Query 167 TAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACC 208
||||||||||||||||||||||||||||||||||||||||||
Sbjct 453684 TAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACC 453725
>seq209
Length=87485
Score = 75.2 bits (82), Expect = 2e-11
Identities = 60/71 (85%), Gaps = 1/71 (1%)
Strand=Plus/Plus
Query 58 TTCCTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCA-AAG 116
|||||||||||||| ||| |||||||||| |||||||||| ||||| | ||| | |||
Sbjct 3 TTCCTCGTTGAAGAGCAATAATTGCAATGCTCTATCCCCAGCACGACAGAGTTTAACAAG 62
Query 117 ATTACCCGGAC 127
||||||| |||
Sbjct 63 ATTACCCAGAC 73
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 751998317165
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |