Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F001465945.1_202015-12- 14] 231 sequences; 42,266,283 total letters Query= AAMG01002236.1 Length=287 Score E Sequences producing significant alignments: (Bits) Value seq2 295 1e-77 >seq2 Length=1043738 Score = 295 bits (326), Expect = 1e-77 Identities = 235/279 (84%), Gaps = 3/279 (1%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||| || |||||| ||||||||||||||||||||||||| ||||||| Sbjct 893993 GTACGAGAGGAACCGCTGA-TTCAGA-TAATTGGTTTTTGCGGCTGTCTGACAAGGCAGT 893936 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 893935 GCCGCGAAGCTACCATCTGCTGGATAATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 893876 Query 121 GAACGGGGTGATTCTCTCCTGCACATCGTAGTCGGATACGAATAGG-CTTCGGCCCCGAA 179 ||| | ||||||| || ||||||||||||||||||||||||| ||| ||||| | | Sbjct 893875 GAAAGCGGTGATTTATACCCACACATCGTAGTCGGATACGAATAGGCCTTTGGCCCTGCA 893816 Query 180 CCTTAGCAGGCCGGCAACGGGCGTCCCGCGGAAGCGCGGGGCGCTCAGCTGGCGGATTGC 239 |||||| || ||||||| | | |||| | | | | | ||||| || |||| Sbjct 893815 TCTTAGCTGGTTGGCAACGATCTCATGGGGGAACACCCGTGGGATTAGCTGACGTCTTGC 893756 Query 240 AATTTCACCATGCGCAGGGATAAATCCTTTGCAGACGAC 278 |||||||||||||| ||| ||||||||||||| ||||| Sbjct 893755 AATTTCACCATGCGTGGGGTTAAATCCTTTGCATACGAC 893717 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 819198166784